4J2O

Crystal structure of NADP-bound WbjB from A. baumannii community strain D1279779


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.653 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of NADP-bound WbjB from A. baumannii community strain D1279779

Shah, B.S.Farrugia, D.N.Tetu, S.G.Harrop, S.J.Paulsen, I.T.Mabbutt, B.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
A, B, C, D, E, F
363Pyrrhocoris apterusMutation(s): 0 
Find proteins for P37362 (Pyrrhocoris apterus)
Go to UniProtKB:  P37362
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download SDF File 
Download CCD File 
A, B, C, D, E, F
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.653 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.160 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 107.930α = 90.00
b = 114.540β = 90.00
c = 215.150γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
CCP4phasing
XDSdata reduction
CCP4model building
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-04-17
    Type: Initial release