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Lugani, A., Lin, C.C., Shi, X., Hoh, F., Ponchon, L., Ktori, C., Dumas, C., Ladbury, J.E., Collette, Y., Morelli, X., Arold, S.T.To be published.
4D8D
Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
- DOI: 10.2210/pdb4D8D/pdb
- Classification: TRANSFERASE/PROTEIN BINDING
- Organism(s): Homo sapiens, Human immunodeficiency virus type 1 group M subtype B
- Expression System: Escherichia coli
- Mutation(s): 1
- Deposited: 2012-01-10 Released: 2013-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.5201 Å
- R-Value Free: 0.238
- R-Value Work: 0.212
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Tyrosine-protein kinase Fyn | A, C | 58 | Homo sapiens | Mutation(s): 1 Gene Names: FYN EC: 2.7.10.2 |
Find proteins for P06241 (Homo sapiens) Go to Gene View: FYN Go to UniProtKB: P06241 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Protein Nef | B, D | 151 | Human immunodeficiency virus type 1 group M subtype B | Mutation(s): 0 Gene Names: nef |
Find proteins for P03406 (Human immunodeficiency virus type 1 group M subtype B) Go to UniProtKB: P03406 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.5201 Å
- R-Value Free: 0.238
- R-Value Work: 0.212
- Space Group: P 65 2 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 108.010 | α = 90.00 |
| b = 108.010 | β = 90.00 |
| c = 224.961 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Deposited Date: 2012-01-10
- Released Date: 2013-01-16
- Deposition Author(s): Arold, S.T., Hoh, F., Dumas, C.
Revision History
- Version 1.0: 2013-01-16
Type: Initial release - Version 1.1: 2018-01-24
Type: Database references
