4D8D

Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5201 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine-protein kinase Fyn
A, C
58Homo sapiensGene Names: FYN
EC: 2.7.10.2
Find proteins for P06241 (Homo sapiens)
Go to Gene View: FYN
Go to UniProtKB:  P06241
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein Nef
B, D
151Human immunodeficiency virus type 1 group M subtype BGene Names: nef
Find proteins for P03406 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P03406
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5201 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.212 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 108.010α = 90.00
b = 108.010β = 90.00
c = 224.961γ = 120.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
SCALAdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2018-01-24
    Type: Database references