4ZNY

Structure of the human TSG101-UEV Domain in complex with the PTAP motif of the p19 gag protein of the Human T-cell Leukemia type I virus

• PDB DOI: https://doi.org/10.2210/pdb4ZNY/pdb

• Classification: PROTEIN TRANSPORT
• Organism(s): Homo sapiens, Human T-cell leukemia virus type I
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-05-05 Released: 2016-06-29 
• Deposition Author(s): Camara-Artigas, A., Bacarizo, J.
• Funding Organization(s): MINECO

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.243 
• R-Value Work: 0.230 
• R-Value Observed: 0.231 

Starting Model: experimental

Literature

Structure of the human TSG101-UEV Domain in complex with the PTAP motif of the p19 gag protein of the Human T-cell Leukemia type I virus

Camara-Artigas, A., Bacarizo, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 17.54 kDa 
• Atom Count: 1,168 
• Modelled Residue Count: 152 
• Deposited Residue Count: 152 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor susceptibility gene 101 protein	A	142	Homo sapiens	Mutation(s): 0  Gene Names: TSG101
UniProt & NIH Common Fund Data Resources
Find proteins for Q99816 (Homo sapiens) Explore Q99816  Go to UniProtKB:  Q99816
PHAROS:  Q99816 GTEx:  ENSG00000074319

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
T-cell leukemia virus type I, partial gag gene; HTLV1 (human T-lymphotropic virus type I)	B	10	Human T-cell leukemia virus type I	Mutation(s): 0
UniProt
Find proteins for P14078 (Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A)) Explore P14078  Go to UniProtKB:  P14078

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.243 
• R-Value Work: 0.230 
• R-Value Observed: 0.231 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.622	α = 90
b = 119.743	β = 90
c = 41.641	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-06-29 
Deposition Author(s): Camara-Artigas, A., Bacarizo, J.

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Funding Organization	Location	Grant Number
MINECO	Spain	BIO2012-39922-C02-02

Revision History  

• Version 1.0: 2016-06-29
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description