4YBV | pdb_00004ybv

Crystal Structure of mutant of (Q32A) thioesterase enzyme SAV0944 from Staphylococcus aureus subsp. aureus Mu50

• PDB DOI: https://doi.org/10.2210/pdb4YBV/pdb

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus subsp. aureus Mu50
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-02-19 Released: 2016-02-10 
• Deposition Author(s): Khandokar, Y.B., Srivastava, P., Forwood, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.234 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.193 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of mutant of (Q32A) hypothetical protein SAV0944 from Staphylococcus aureus subsp. aureus Mu50

Khandokar, Y.B., Srivastava, P., Forwood, J.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 55.12 kDa 
• Atom Count: 3,905 
• Modeled Residue Count: 484 
• Deposited Residue Count: 508 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C, D	127	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 1  Gene Names: SAV0944
UniProt
Find proteins for A0A0H3JUJ1 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JUJ1  Go to UniProtKB:  A0A0H3JUJ1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.234 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.193 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.64	α = 90
b = 90.85	β = 99.02
c = 65.15	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-02-10 
Deposition Author(s): Khandokar, Y.B., Srivastava, P., Forwood, J.

Revision History  

• Version 1.0: 2016-02-10
  Type: Initial release
  
• Version 1.1: 2017-11-01
  Changes: Author supporting evidence, Data collection, Derived calculations
• Version 1.2: 2023-09-27
  Changes: Data collection, Database references, Refinement description