Biological Assembly 1  

 3D View: Structure | 1D-3D View | Electron Density | Validation Report | Ligand Interaction | Predict Membrane 

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 47.68 kDa 
• Atom Count: 3110 
• Modelled Residue Count: 393 
• Deposited Residue Count: 414 
• Unique protein chains: 1

4YAY

XFEL structure of human Angiotensin Receptor

• PDB DOI: 10.2210/pdb4YAY/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Escherichia coli, Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 
• Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc


• Deposited: 2015-02-18 Released: 2015-04-22 
• Deposition Author(s): Zhang, H., Unal, H., Gati, C., Han, G.W., Zatsepin, N.A., James, D., Wang, D., Nelson, G., Weierstall, U., Messerschmidt, M., Williams, G.J., Boutet, S., Yefanov, O.M., White, T.A., Liu, W., Ishchenko, A., Tirupula, K.C., Desnoyer, R., Sawaya, M.C., Xu, Q., Coe, J., Cornrad, C.E., Fromme, P., Stevens, R.C., Katritch, V., Karnik, S.S., Cherezov, V., GPCR Network (GPCR)
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.274 
• R-Value Work: 0.228 
• R-Value Observed: 0.231 

Literature

Structure of the Angiotensin receptor revealed by serial femtosecond crystallography.

Zhang, H., Unal, H., Gati, C., Han, G.W., Liu, W., Zatsepin, N.A., James, D., Wang, D., Nelson, G., Weierstall, U., Sawaya, M.R., Xu, Q., Messerschmidt, M., Williams, G.J., Boutet, S., Yefanov, O.M., White, T.A., Wang, C., Ishchenko, A., Tirupula, K.C., Desnoyer, R., Coe, J., Conrad, C.E., Fromme, P., Stevens, R.C., Katritch, V., Karnik, S.S., Cherezov, V.

(2015) Cell 161: 833-844

• PubMed: 25913193 
• DOI: 10.1016/j.cell.2015.04.011
• Primary Citation of Related Structures:  
  4YAY


• PubMed Abstract: 
  

Angiotensin II type 1 receptor (AT(1)R) is a G protein-coupled receptor that serves as a primary regulator for blood pressure maintenance. Although several anti-hypertensive drugs have been developed as AT(1)R blockers (ARBs), the structural basis for AT(1)R ligand-binding and regulation has remained elusive, mostly due to the difficulties of growing high-quality crystals for structure determination using synchrotron radiation. By applying the recently developed method of serial femtosecond crystallography at an X-ray free-electron laser, we successfully determined the room-temperature crystal structure of the human AT(1)R in complex with its selective antagonist ZD7155 at 2.9-Å resolution. The AT(1)R-ZD7155 complex structure revealed key structural features of AT(1)R and critical interactions for ZD7155 binding. Docking simulations of the clinically used ARBs into the AT(1)R structure further elucidated both the common and distinct binding modes for these anti-hypertensive drugs. Our results thereby provide fundamental insights into AT(1)R structure-function relationship and structure-based drug design.

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Organizational Affiliation: 

Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, CA 90089 USA. Electronic address: [e-mail].

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Soluble cytochrome b562,Type-1 angiotensin II receptor	A	414	Escherichia coli, Homo sapiens This entity is chimeric	Mutation(s): 3  Gene Names: cybC, AGTR1, AGTR1A, AGTR1B, AT2R1, AT2R1B Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P30556 (Homo sapiens) Explore P30556  Go to UniProtKB:  P30556
PHAROS:  P30556 GTEx:  ENSG00000144891
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7  Go to UniProtKB:  P0ABE7
UniProt Groups	P30556P0ABE7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZD7	B [auth A]	5,7-diethyl-1-{[2'-(1H-tetrazol-5-yl)biphenyl-4-yl]methyl}-3,4-dihydro-1,6-naphthyridin-2(1H)-one C26 H26 N6 O BFVNEYDCFJNLGN-UHFFFAOYSA-N

Binding Affinity Annotations
ID	Source	Binding Affinity
ZD7	BindingDB:  4YAY	IC50: 3.8 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.274 
• R-Value Work: 0.228 
• R-Value Observed: 0.231 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.8	α = 90
b = 41	β = 99.4
c = 167.7	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PHASER	phasing
CrystFEL	data scaling
CrystFEL	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2015-02-18 
• Released Date: 2015-04-22 
Deposition Author(s): Zhang, H., Unal, H., Gati, C., Han, G.W., Zatsepin, N.A., James, D., Wang, D., Nelson, G., Weierstall, U., Messerschmidt, M., Williams, G.J., Boutet, S., Yefanov, O.M., White, T.A., Liu, W., Ishchenko, A., Tirupula, K.C., Desnoyer, R., Sawaya, M.C., Xu, Q., Coe, J., Cornrad, C.E., Fromme, P., Stevens, R.C., Katritch, V., Karnik, S.S., Cherezov, V., GPCR Network (GPCR)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	U54 GM094618

Revision History  

• Version 1.0: 2015-04-22
  Type: Initial release
  
• Version 1.1: 2015-05-06
  Changes: Structure summary
• Version 1.2: 2015-05-13
  Changes: Database references
• Version 1.3: 2015-05-27
  Changes: Database references
• Version 1.4: 2017-09-06
  Changes: Author supporting evidence, Derived calculations, Source and taxonomy
• Version 1.5: 2017-11-22
  Changes: Refinement description
• Version 1.6: 2018-02-14
  Changes: Data collection
• Version 1.7: 2019-12-25
  Changes: Author supporting evidence