4Y6I

Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation

PDB DOI: https://doi.org/10.2210/pdb4Y6I/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2015-02-13 Released: 2015-09-23
Deposition Author(s): Tanaka, T., Matsuura, Y., Yutani, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.200
R-Value Work: 0.171
R-Value Observed: 0.172

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of E.coli CutA1 E61V/C16A/C39A/C79A mutation

Tanaka, T., Matsuura, Y., Yutani, K.

To be published.

Macromolecule Content

Total Structure Weight: 70.36 kDa
Atom Count: 5,592
Modelled Residue Count: 629
Deposited Residue Count: 648
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Divalent-cation tolerance protein CutA	A, B, C, D, E A, B, C, D, E, F	108	Escherichia coli K-12	Mutation(s): 4 Gene Names: cutA, cutA1, cycY, b4137, JW4097
UniProt
Find proteins for P69488 (Escherichia coli (strain K12)) Explore P69488 Go to UniProtKB: P69488
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P69488
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.200
R-Value Work: 0.171
R-Value Observed: 0.172
Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 127.72	α = 90
b = 127.72	β = 90
c = 38.201	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SCALEPACK	data scaling
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-09-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-09-23
Type: Initial release
Version 1.1: 2020-02-05
Changes: Data collection, Derived calculations
Version 1.2: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.