4XCW | pdb_00004xcw

Crystal structure of molybdenum cofactor biosynthesis protein MogA from Helicobacter pylori str. J99

PDB DOI: https://doi.org/10.2210/pdb4XCW/pdb

Classification: TRANSFERASE
Organism(s): Helicobacter pylori J99
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-12-18 Released: 2015-02-04
Deposition Author(s): Stogios, P.J., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.199 (Depositor), 0.200 (DCC)
R-Value Work:
0.164 (Depositor), 0.167 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

To be published

Stogios, P.J., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 119.06 kDa
Atom Count: 9,473
Modeled Residue Count: 1,052
Deposited Residue Count: 1,068
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdopterin adenylyltransferase	A, B, C, D, E A, B, C, D, E, F	178	Helicobacter pylori J99	Mutation(s): 0 Gene Names: mog, mogA, jhp_0735 EC: 2.7.7.75
UniProt
Find proteins for Q9ZL45 (Helicobacter pylori (strain J99 / ATCC 700824)) Explore Q9ZL45 Go to UniProtKB: Q9ZL45
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9ZL45
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.199 (Depositor), 0.200 (DCC)
R-Value Work: 0.164 (Depositor), 0.167 (DCC)
R-Value Observed: 0.164 (Depositor)

Diffraction Data:

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.619	α = 71.97
b = 66.018	β = 86.42
c = 76.049	γ = 60.22

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing
PHENIX	model building
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-02-04

Deposition Author(s):

Onopriyenko, O.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2015-02-04
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.