4XCW | pdb_00004xcw

Crystal structure of molybdenum cofactor biosynthesis protein MogA from Helicobacter pylori str. J99

• PDB DOI: https://doi.org/10.2210/pdb4XCW/pdb

• Classification: TRANSFERASE
• Organism(s): Helicobacter pylori J99
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-12-18 Released: 2015-02-04 
• Deposition Author(s): Stogios, P.J., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.199 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.164 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.164 (Depositor) 

Starting Model: experimental

Literature

To be published

Stogios, P.J., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 119.06 kDa 
• Atom Count: 9,473 
• Modeled Residue Count: 1,052 
• Deposited Residue Count: 1,068 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdopterin adenylyltransferase	A, B, C, D, E, F	178	Helicobacter pylori J99	Mutation(s): 0  Gene Names: mog, mogA, jhp_0735 EC: 2.7.7.75
UniProt
Find proteins for Q9ZL45 (Helicobacter pylori (strain J99 / ATCC 700824)) Explore Q9ZL45  Go to UniProtKB:  Q9ZL45

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.199 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.164 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.164 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m34xcw

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.619	α = 71.97
b = 66.018	β = 86.42
c = 76.049	γ = 60.22

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing
PHENIX	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-04 
Deposition Author(s): Stogios, P.J., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2015-02-04
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy