4XCW

Crystal structure of molybdenum cofactor biosynthesis protein MogA from Helicobacter pylori str. J99

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4xcwa1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
A	d4xcwa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
B	d4xcwb1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
B	d4xcwb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
C	d4xcwc1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
C	d4xcwc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
D	d4xcwd1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
D	d4xcwd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
E	d4xcwe1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
E	d4xcwe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
F	d4xcwf1	Alpha and beta proteins (a/b)	Molybdenum cofactor biosynthesis proteins	Molybdenum cofactor biosynthesis proteins	MogA-like	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)
F	d4xcwf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	MogA-like	8076168	4000598	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Molybdenum cofactor biosynthesis proteins	8076169	3000702	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00994	e4xcwA1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)
B	PF00994	e4xcwB1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)
C	PF00994	e4xcwC1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)
D	PF00994	e4xcwD1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)
E	PF00994	e4xcwE1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)
F	PF00994	e4xcwF1	A: a/b three-layered sandwiches	X: Molybdenum cofactor biosynthesis proteins (From Topology)	H: Molybdenum cofactor biosynthesis proteins (From Topology)	T: Molybdenum cofactor biosynthesis proteins	F: PF00994	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
B	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
C	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
D	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
E	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)
F	3.40.980.10	Alpha Beta	3-Layer(aba) Sandwich	Molybdenum Cofactor Biosythetic Enzyme	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00994	Probable molybdopterin binding domain (MoCF_biosynth)	Probable molybdopterin binding domain	This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyr ...	This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Molybdopterin adenylyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenylyltransferase activity molybdopterin adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	organonitrogen compound metabolic process Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process prosthetic group metabolic process molybdopterin cofactor biosynthetic process organic cyclic compound metabolic process organic substance metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process organic cyclic compound biosynthetic process organonitrogen compound metabolic process Mo-molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor metabolic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process prosthetic group metabolic process molybdopterin cofactor biosynthetic process organic cyclic compound metabolic process organic substance metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process molybdopterin cofactor metabolic process organic cyclic compound biosynthetic process phosphate-containing compound metabolic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036425	MoaB/Mog-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR008284	Molybdenum cofactor biosynthesis, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR001453	MoaB/Mog domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.