4XAD

Crystal structure of hen egg white lysozyme in complex with Galf-GlcNAc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.140 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of hen egg white lysozyme in complex with Galf-GlcNAc, an O-linked disaccharide core from Trypanosoma cruzi

Wangkanont, K.Kiessling, L.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusGene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3ZW
Query on 3ZW

Download SDF File 
Download CCD File 
A
2-(acetylamino)-2-deoxy-4-O-beta-D-galactofuranosyl-alpha-D-glucopyranose
Galf-GlcNAc
C14 H25 N O11
XDJSTHFKZUCWKK-WHPAFNSRSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.140 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 78.002α = 90.00
b = 78.002β = 90.00
c = 37.709γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-31
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Advisory, Derived calculations, Refinement description, Source and taxonomy, Structure summary