4WO9

Lysozyme Post-Surface Acoustic Waves

  • Classification: HYDROLASE
  • Organism(s): Gallus gallus
  • Expression System: Gallus gallus

  • Deposited: 2014-10-15 Released: 2015-02-18 
  • Deposition Author(s): French, J.B.
  • Funding Organization(s): National Institutes of Health/Office of the Director; National Science Foundation (United States) 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.147 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves.

Guo, F.Zhou, W.Li, P.Mao, Z.Yennawar, N.H.French, J.B.Huang, T.J.

(2015) Small 11: 2733-2737

  • DOI: 10.1002/smll.201403262
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Advances in modern X-ray sources and detector technology have made it possible for crystallographers to collect usable data on crystals of only a few micrometers or less in size. Despite these developments, sample handling techniques have significant ...

    Advances in modern X-ray sources and detector technology have made it possible for crystallographers to collect usable data on crystals of only a few micrometers or less in size. Despite these developments, sample handling techniques have significantly lagged behind and often prevent the full realization of current beamline capabilities. In order to address this shortcoming, a surface acoustic wave-based method for manipulating and patterning crystals is developed. This method, which does not damage the fragile protein crystals, can precisely manipulate and pattern micrometer and submicrometer-sized crystals for data collection and screening. The technique is robust, inexpensive, and easy to implement. This method not only promises to significantly increase efficiency and throughput of both conventional and serial crystallography experiments, but will also make it possible to collect data on samples that were previously intractable.


    Organizational Affiliation

    Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, PA, 16802, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusGene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.147 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 79.206α = 90.00
b = 79.206β = 90.00
c = 37.644γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2014-10-15 
  • Released Date: 2015-02-18 
  • Deposition Author(s): French, J.B.

Funding OrganizationCountryGrant Number
National Institutes of Health/Office of the DirectorUnited States1DP2OD007209-01
National Science Foundation (United States)United StatesCBET-1438126 and IIP-1346440

Revision History 

  • Version 1.0: 2015-02-18
    Type: Initial release
  • Version 1.1: 2015-07-01
    Type: Database references
  • Version 1.2: 2017-09-20
    Type: Author supporting evidence, Derived calculations, Other, Source and taxonomy