4WLK

Stationary Phase Survival Protein YuiC from B.subtilis complexed with reaction product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the stationary phase survival protein YuiC from B.subtilis.

Quay, D.H.Cole, A.R.Cryar, A.Thalassinos, K.Williams, M.A.Bhakta, S.Keep, N.H.

(2015) Bmc Struct.Biol. 15: 12-12

  • DOI: 10.1186/s12900-015-0039-z
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Stationary phase survival proteins (Sps) were found in Firmicutes as having analogous domain compositions, and in some cases genome context, as the resuscitation promoting factors of Actinobacteria, but with a different putative peptidoglycan cleavin ...

    Stationary phase survival proteins (Sps) were found in Firmicutes as having analogous domain compositions, and in some cases genome context, as the resuscitation promoting factors of Actinobacteria, but with a different putative peptidoglycan cleaving domain.


    Organizational Affiliation

    Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. n.keep@mail.cryst.bbk.ac.uk.,Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Gower Street, London, WC1E 6BT, UK. a.cryar@ucl.ac.uk.,Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. d.quay@mail.cryst.bbk.ac.uk.,Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. s.bhakta@bbk.ac.uk.,Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. a.cole@mail.cryst.bbk.ac.uk.,Institute of Structural and Molecular Biology, Division of Biosciences, University College London, Gower Street, London, WC1E 6BT, UK. k.thalassinos@ucl.ac.uk.,Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. m.williams@mail.cryst.bbk.ac.uk.,Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. k.thalassinos@ucl.ac.uk.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YuiC
A, B
166Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yuiC
Find proteins for O32108 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O32108
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3QL
Query on 3QL

Download SDF File 
Download CCD File 
A, B
N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide
C16 H26 N2 O10
UVQRTGABPMLDOA-KSKNGZLJSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.172 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 147.210α = 90.00
b = 147.210β = 90.00
c = 37.870γ = 120.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Database references