4WJT

Stationary Phase Survival Protein YuiC from B.subtilis complexed with NAG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 0.144 
  • R-Value Work: 0.111 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the stationary phase survival protein YuiC from B.subtilis.

Quay, D.H.Cole, A.R.Cryar, A.Thalassinos, K.Williams, M.A.Bhakta, S.Keep, N.H.

(2015) Bmc Struct.Biol. 15: 12-12

  • DOI: 10.1186/s12900-015-0039-z
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Stationary phase survival proteins (Sps) were found in Firmicutes as having analogous domain compositions, and in some cases genome context, as the resuscitation promoting factors of Actinobacteria, but with a different putative peptidoglycan cleavin ...

    Stationary phase survival proteins (Sps) were found in Firmicutes as having analogous domain compositions, and in some cases genome context, as the resuscitation promoting factors of Actinobacteria, but with a different putative peptidoglycan cleaving domain.


    Organizational Affiliation

    Institute for Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck University of London, Malet Street, London, WC1E 7HX, UK. d.quay@mail.cryst.bbk.ac.uk.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein YuiC
A, B
167Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yuiC
Find proteins for O32108 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O32108
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3P9
Query on 3P9

Download SDF File 
Download CCD File 
B
(2S)-2-{[(2S)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propan-1-ol
Polypropyleneglycol
C9 H20 O4
LCZVSXRMYJUNFX-VGMNWLOBSA-N
 Ligand Interaction
DMS
Query on DMS

Download SDF File 
Download CCD File 
A, B
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.21 Å
  • R-Value Free: 0.144 
  • R-Value Work: 0.111 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 145.480α = 90.00
b = 145.480β = 90.00
c = 37.820γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
ACORNphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Commonwealth Studies CommissionUnited KingdomMYCS-2011-252

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Database references