4V8M

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.

Hashem, Y.Des Georges, A.Fu, J.Buss, S.N.Jossinet, F.Jobe, A.Zhang, Q.Liao, H.Y.Grassucci, R.A.Bajaj, C.Westhof, E.Madison-Antenucci, S.Frank, J.

(2013) Nature 494: 385

  • DOI: 10.1038/nature11872
  • Primary Citation of Related Structures:  3ZEQ, 3ZEX, 3ZEY, 3ZF7

  • PubMed Abstract: 
  • Ribosomes, the protein factories of living cells, translate genetic information carried by messenger RNAs into proteins, and are thus involved in virtually all aspects of cellular development and maintenance. The few available structures of the eukar ...

    Ribosomes, the protein factories of living cells, translate genetic information carried by messenger RNAs into proteins, and are thus involved in virtually all aspects of cellular development and maintenance. The few available structures of the eukaryotic ribosome reveal that it is more complex than its prokaryotic counterpart, owing mainly to the presence of eukaryote-specific ribosomal proteins and additional ribosomal RNA insertions, called expansion segments. The structures also differ among species, partly in the size and arrangement of these expansion segments. Such differences are extreme in kinetoplastids, unicellular eukaryotic parasites often infectious to humans. Here we present a high-resolution cryo-electron microscopy structure of the ribosome of Trypanosoma brucei, the parasite that is transmitted by the tsetse fly and that causes African sleeping sickness. The atomic model reveals the unique features of this ribosome, characterized mainly by the presence of unusually large expansion segments and ribosomal-protein extensions leading to the formation of four additional inter-subunit bridges. We also find additional rRNA insertions, including one large rRNA domain that is not found in other eukaryotes. Furthermore, the structure reveals the five cleavage sites of the kinetoplastid large ribosomal subunit (LSU) rRNA chain, which is known to be cleaved uniquely into six pieces, and suggests that the cleavage is important for the maintenance of the T. brucei ribosome in the observed structure. We discuss several possible implications of the large rRNA expansion segments for the translation-regulation process. The structure could serve as a basis for future experiments aimed at understanding the functional importance of these kinetoplastid-specific ribosomal features in protein-translation regulation, an essential step towards finding effective and safe kinetoplastid-specific drugs.


    Organizational Affiliation

    Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S3A, PUTATIVE
A0
256Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38BK6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38BK6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S4, PUTATIVE
A1
273Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q386F2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q386F2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S5, PUTATIVE
A2
190Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q385D9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q385D9
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S6
A3
250Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CL9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CL9
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN S7, PUTATIVE
A4
202Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38FD9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38FD9
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S8
A5
220Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57YL6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57YL6
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S9, PUTATIVE
A6
190Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57VP3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57VP3
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
A7
318Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383E1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383E1
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN S29, PUTATIVE
A8
57N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVE
A9
153Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57WI3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57WI3
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN SA, PUTATIVE
AC
277Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383I8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383I8
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S10, PUTATIVE
AD
172Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38B66 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38B66
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEINS S11, PUTATIVE
AE
174Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CI4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CI4
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S12
AF
144Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q385Y8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q385Y8
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S13, PUTATIVE
AG
151Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q586C2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q586C2
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S14
AH
144Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q4FKG9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q4FKG9
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S15, PUTATIVE
AI
152Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57XN7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57XN7
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S15A, PUTATIVE
AJ
130Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q580K6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q580K6
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S16, PUTATIVE
AK
149Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57VV0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57VV0
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S17, PUTATIVE
AL
142Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q382Z8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q382Z8
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S18, PUTATIVE
AM
153Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38B69 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38B69
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN S19, PUTATIVE
AO
167Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q583K7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q583K7
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S2, PUTATIVE
AP
266Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q388D3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q388D3
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN S20, PUTATIVE
AQ
117N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S21, PUTATIVE
AR
194Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q385B8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q385B8
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S23, PUTATIVE
AS
143Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CD1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CD1
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S24
AT
137Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38AM9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38AM9
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S25, PUTATIVE
AU
113Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57XX0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57XX0
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN S26, PUTATIVE
AV
111Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q384J9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q384J9
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S27, PUTATIVE
AW
86Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383V7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383V7
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S3, PUTATIVE
AX
214Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q389I7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q389I7
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S30, PUTATIVE
AY
66Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q584U5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q584U5
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
40S RIBOSOMAL PROTEIN S33, PUTATIVE
AZ
103Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57U30 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57U30
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L18
BI
193Trypanosoma brucei brucei (strain 927/4 GUTat10.1)Gene Names: RPL18-A, RPL18-B
Find proteins for P50885 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  P50885
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN
BJ
214Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383V8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383V8
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L10, PUTATIVE
BK
213Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38EC5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38EC5
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L11, PUTATIVE
BL
194Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38EI9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38EI9
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L12, PUTATIVE
BM
164Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57YK4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57YK4
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L13
BN
218Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57V54 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57V54
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L13A, PUTATIVE
BO
222Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q585J5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q585J5
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
PROBABLE 60S RIBOSOMAL PROTEIN L14
BP
189Trypanosoma brucei bruceiN/A
Find proteins for P55842 (Trypanosoma brucei brucei)
Go to UniProtKB:  P55842
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN L15
BQ
221Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CY7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CY7
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L17, PUTATIVE
BR
166Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q385T6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q385T6
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L18A
BS
179Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q382C4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q382C4
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L19, PUTATIVE
BT
260Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57ZI7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57ZI7
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L21E, PUTATIVE
BU
159Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q4FKD4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q4FKD4
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L22, PUTATIVE
BV
130Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383R3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383R3
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L23, PUTATIVE
BW
139Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38DP2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38DP2
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L23A
BX
164Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57ZH2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57ZH2
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L24, PUTATIVE
BY
125Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38B56 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38B56
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L26, PUTATIVE
BZ
143Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38D25 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38D25
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L27, PUTATIVE
Ba
133Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q381J6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q381J6
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L27A
Bb
145Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38DN9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38DN9
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L28, PUTATIVE
Bc
146Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q385E9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q385E9
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L29, PUTATIVE
Bd
71Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383S6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383S6
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L2, PUTATIVE
Be
260Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57W56 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57W56
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE
Bf
429Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q581Q1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q581Q1
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L30
Bg
105Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38BI9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38BI9
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL SUBUNIT PROTEIN L31, PUTATIVE
Bh
188Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38DH8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38DH8
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L32, PUTATIVE
Bi
132Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CL1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CL1
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L34, PUTATIVE
Bj
170Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q383V6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q383V6
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L35, PUTATIVE
Bk
127Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38FW8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38FW8
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L35A, PUTATIVE
Bl
149Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q584G9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q584G9
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN L36, PUTATIVE
Bm
109Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CY6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CY6
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
RIBOSOMAL PROTEIN L37
Bn
84Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q386L1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q386L1
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L37A, PUTATIVE
Bo
93Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38AW9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38AW9
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L38, PUTATIVE
Bp
82Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38FV6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38FV6
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L39, PUTATIVE
Bq
51Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57UJ8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57UJ8
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L4
Br
374Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q582N2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q582N2
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Bs
128Trypanosoma brucei bruceiN/A
Find proteins for P21899 (Trypanosoma brucei brucei)
Go to UniProtKB:  P21899
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L44
Bt
106Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for D7SG81 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  D7SG81
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L5, PUTATIVE
Bu
308Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CY8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CY8
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L6, PUTATIVE
Bv
192Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q389K1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q389K1
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L7, PUTATIVE
Bw
257Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57V35 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57V35
Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L7A, PUTATIVE
Bx
276Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q57VM1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q57VM1
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
60S RIBOSOMAL PROTEIN L9, PUTATIVE
By
189Trypanosoma brucei brucei (strain 927/4 GUTat10.1)N/A
Find proteins for Q38CD0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Go to UniProtKB:  Q38CD0
Entity ID: 34
MoleculeChainsLengthOrganism
ALPHA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNABA1847Trypanosoma brucei
Entity ID: 35
MoleculeChainsLengthOrganism
BETA CHAIN OF THE LARGE RIBOSOMAL SUBUNIT 28S RRNABB1465Trypanosoma brucei
Entity ID: 36
MoleculeChainsLengthOrganism
5.8S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITBC169Trypanosoma brucei
Entity ID: 37
MoleculeChainsLengthOrganism
5S RRNA CHAIN OF THE LARGE RIBOSOMAL SUBUNITBD119Trypanosoma brucei
Entity ID: 38
MoleculeChainsLengthOrganism
SHORT RRNA-I OF THE LARGE RIBOSOMAL SUBUNITBE210Trypanosoma brucei
Entity ID: 39
MoleculeChainsLengthOrganism
SHORT RRNA-II OF THE LARGE RIBOSOMAL SUBUNITBF73Trypanosoma brucei
Entity ID: 40
MoleculeChainsLengthOrganism
SHORT RRNA-III OF THE LARGE RIBOSOMAL SUBUNITBG182Trypanosoma brucei
Entity ID: 41
MoleculeChainsLengthOrganism
SHORT RRNA-IV OF THE LARGE RIBOSOMAL SUBUNITBH135Trypanosoma brucei
Entity ID: 85
MoleculeChainsLengthOrganism
18S RRNA OF THE SMALL RIBOSOMAL SUBUNITAA2251Trypanosoma brucei
Entity ID: 86
MoleculeChainsLengthOrganism
E-SITE TRNAAB73Trypanosoma brucei
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Other
  • Version 1.2: 2015-04-22
    Type: Other
  • Version 2.0: 2017-08-02
    Type: Advisory, Atomic model, Data collection, Derived calculations