4V8M
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth A0] | SCOP2 Family | Ribosomal S3Ae | 8048450 | 4006095 | SCOP2 (2022-06-29) |
A [auth A0] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053205 | 3002166 | SCOP2 (2022-06-29) |
K [auth AC] | SCOP2 Family | Ribosomal protein S2-like | 8063811 | 4003744 | SCOP2 (2022-06-29) |
K [auth AC] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8063812 | 3001397 | SCOP2 (2022-06-29) |
L [auth AD] | SCOP2 Family | eS10-like | 8051607 | 4007434 | SCOP2 (2022-06-29) |
L [auth AD] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8055706 | 3000034 | SCOP2 (2022-06-29) |
M [auth AE] | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045084 | 4004290 | SCOP2 (2022-06-29) |
M [auth AE] | SCOP2 Family | Cold shock DNA-binding domain-like | 8052728 | 4001909 | SCOP2 (2022-06-29) |
M [auth AE] | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052727 | 3002138 | SCOP2 (2022-06-29) |
M [auth AE] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052729 | 3000135 | SCOP2 (2022-06-29) |
N [auth AF] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8063969 | 4001513 | SCOP2 (2022-06-29) |
N [auth AF] | SCOP2 Superfamily | L30e-like | 8063970 | 3001739 | SCOP2 (2022-06-29) |
O [auth AG] | SCOP2 Family | 40S Ribosomal protein S13, N-terminal domain-like | 8050314 | 4006843 | SCOP2 (2022-06-29) |
O [auth AG] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8052951 | 4000767 | SCOP2 (2022-06-29) |
O [auth AG] | SCOP2 Superfamily | Homeodomain-like | 8052952 | 3000001 | SCOP2 (2022-06-29) |
O [auth AG] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8052953 | 3001284 | SCOP2 (2022-06-29) |
P [auth AH] | SCOP2 Family | Ribosomal protein L18p and S11 | 8099491 | 4000555 | SCOP2 (2022-06-29) |
P [auth AH] | SCOP2 Superfamily | Translational machinery components | 8099492 | 3000571 | SCOP2 (2022-06-29) |
R [auth AJ] | SCOP2 Family | Ribosomal protein S8 | 8081972 | 4002027 | SCOP2 (2022-06-29) |
R [auth AJ] | SCOP2 Superfamily | Ribosomal protein S8 | 8081973 | 3000709 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8044899 | 4004197 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048389 | 4001909 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050327 | 4006847 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052769 | 3000334 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052768 | 3000135 | SCOP2 (2022-06-29) |
B [auth A1] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052767 | 3001473 | SCOP2 (2022-06-29) |
U [auth AM] | SCOP2 Family | Ribosomal protein S13 | 8101618 | 4000260 | SCOP2 (2022-06-29) |
U [auth AM] | SCOP2 Superfamily | S13-like H2TH domain | 8101619 | 3000053 | SCOP2 (2022-06-29) |
Y [auth AR] | SCOP2 Family | Ribosomal protein S21e | 8048782 | 4006215 | SCOP2 (2022-06-29) |
Y [auth AR] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053133 | 3000068 | SCOP2 (2022-06-29) |
BA [auth AU] | SCOP2 Family | Ribosomal protein S25-like | 8051329 | 4007308 | SCOP2 (2022-06-29) |
BA [auth AU] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8090998 | 3000034 | SCOP2 (2022-06-29) |
CA [auth AV] | SCOP2 Family | Ribosomal protein S26e | 8048844 | 4006236 | SCOP2 (2022-06-29) |
CA [auth AV] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053142 | 3000068 | SCOP2 (2022-06-29) |
C [auth A2] | SCOP2 Family | Ribosomal protein S7 | 8066014 | 4001112 | SCOP2 (2022-06-29) |
C [auth A2] | SCOP2 Superfamily | Ribosomal protein S7 | 8066015 | 3000799 | SCOP2 (2022-06-29) |
FA [auth AY] | SCOP2 Family | Ribosomal protein S30e-like | 8046414 | 4005067 | SCOP2 (2022-06-29) |
FA [auth AY] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8053450 | 3002190 | SCOP2 (2022-06-29) |
GA [auth AZ] | SCOP2 Family | Cold shock DNA-binding domain-like | 8063435 | 4001909 | SCOP2 (2022-06-29) |
GA [auth AZ] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8063436 | 3000135 | SCOP2 (2022-06-29) |
D [auth A3] | SCOP2 Family | Ribosomal protein S6e | 8048562 | 4006143 | SCOP2 (2022-06-29) |
D [auth A3] | SCOP2 Superfamily | GS N-terminal domain-like | 8053164 | 3000408 | SCOP2 (2022-06-29) |
PA [auth BI] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8046505 | 4003555 | SCOP2 (2022-06-29) |
PA [auth BI] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8095971 | 3001045 | SCOP2 (2022-06-29) |
QA [auth BJ] | SCOP2 Family | Ribosomal protein L1p/L10e-like | 8065341 | 4002929 | SCOP2 (2022-06-29) |
QA [auth BJ] | SCOP2 Superfamily | Ribosomal protein L1p/L10e-like | 8065342 | 3001911 | SCOP2 (2022-06-29) |
RA [auth BK] | SCOP2 Family | Ribosomal protein L10e | 8099387 | 4001135 | SCOP2 (2022-06-29) |
RA [auth BK] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8099388 | 3000884 | SCOP2 (2022-06-29) |
SA [auth BL] | SCOP2 Family | Ribosomal protein L5 | 8077506 | 4001498 | SCOP2 (2022-06-29) |
SA [auth BL] | SCOP2 Superfamily | RL5-like | 8077507 | 3001709 | SCOP2 (2022-06-29) |
UA [auth BN] | SCOP2 Family | Ribosomal protein L13e | 8048854 | 4006241 | SCOP2 (2022-06-29) |
UA [auth BN] | SCOP2 Superfamily | Ribosomal protein L13e-like | 8053158 | 3002162 | SCOP2 (2022-06-29) |
XA [auth BQ] | SCOP2 Family | L15e | 8082490 | 4000945 | SCOP2 (2022-06-29) |
XA [auth BQ] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082491 | 3000210 | SCOP2 (2022-06-29) |
YA [auth BR] | SCOP2 Family | Ribosomal protein L22 | 8076713 | 4001212 | SCOP2 (2022-06-29) |
YA [auth BR] | SCOP2 Superfamily | Ribosomal protein L22 | 8076714 | 3001078 | SCOP2 (2022-06-29) |
AB [auth BT] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8106295 | 4001138 | SCOP2 (2022-06-29) |
AB [auth BT] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8106296 | 3000890 | SCOP2 (2022-06-29) |
CB [auth BV] | SCOP2 Family | 60S Ribosomal protein L22e | 8049496 | 4006528 | SCOP2 (2022-06-29) |
CB [auth BV] | SCOP2 Superfamily | 60S Ribosomal protein L22e | 8053057 | 3002158 | SCOP2 (2022-06-29) |
DB [auth BW] | SCOP2 Family | Ribosomal protein L14 | 8072051 | 4001826 | SCOP2 (2022-06-29) |
DB [auth BW] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8072052 | 3000433 | SCOP2 (2022-06-29) |
EB [auth BX] | SCOP2 Family | L23p | 8061165 | 4000943 | SCOP2 (2022-06-29) |
EB [auth BX] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8077085 | 3000210 | SCOP2 (2022-06-29) |
GB [auth BZ] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8076747 | 4001752 | SCOP2 (2022-06-29) |
GB [auth BZ] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076748 | 3000334 | SCOP2 (2022-06-29) |
F [auth A5] | SCOP2 Family | Ribosomal protein S8e | 8048718 | 4006189 | SCOP2 (2022-06-29) |
F [auth A5] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053073 | 3000433 | SCOP2 (2022-06-29) |
HB [auth Ba] | SCOP2 Family | Ribosomal protein L27e | 8049502 | 4006529 | SCOP2 (2022-06-29) |
HB [auth Ba] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053048 | 3000334 | SCOP2 (2022-06-29) |
IB [auth Bb] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8099385 | 4003555 | SCOP2 (2022-06-29) |
IB [auth Bb] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8099386 | 3001045 | SCOP2 (2022-06-29) |
KB [auth Bd] | SCOP2 Family | Ribosomal protein L29e | 8049524 | 4006531 | SCOP2 (2022-06-29) |
KB [auth Bd] | SCOP2 Superfamily | Ribosomal protein L29e | 8053040 | 3002157 | SCOP2 (2022-06-29) |
MB [auth Bf] | SCOP2 Family | Ribosomal protein L3 | 8099559 | 4002103 | SCOP2 (2022-06-29) |
MB [auth Bf] | SCOP2 Superfamily | Translational proteins | 8099560 | 3000811 | SCOP2 (2022-06-29) |
NB [auth Bg] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8099383 | 4001513 | SCOP2 (2022-06-29) |
NB [auth Bg] | SCOP2 Superfamily | L30e-like | 8099384 | 3001739 | SCOP2 (2022-06-29) |
PB [auth Bi] | SCOP2 Family | Ribosomal protein L32e | 8102448 | 4003517 | SCOP2 (2022-06-29) |
PB [auth Bi] | SCOP2 Superfamily | Ribosomal protein L32e | 8102449 | 3000982 | SCOP2 (2022-06-29) |
QB [auth Bj] | SCOP2 Family | Ribosomal protein L34e-like | 8048732 | 4006193 | SCOP2 (2022-06-29) |
QB [auth Bj] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8053536 | 3002203 | SCOP2 (2022-06-29) |
SB [auth Bl] | SCOP2 Family | Ribosomal protein L35ae | 8099563 | 4003173 | SCOP2 (2022-06-29) |
SB [auth Bl] | SCOP2 Superfamily | Translational proteins | 8099564 | 3000811 | SCOP2 (2022-06-29) |
TB [auth Bm] | SCOP2 Family | Ribosomal protein L36e | 8048630 | 4006168 | SCOP2 (2022-06-29) |
TB [auth Bm] | SCOP2 Superfamily | Ribosomal protein L36e | 8053121 | 3002161 | SCOP2 (2022-06-29) |
VB [auth Bo] | SCOP2 Family | Ribosomal protein L37ae | 8101616 | 4003704 | SCOP2 (2022-06-29) |
VB [auth Bo] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8101617 | 3001320 | SCOP2 (2022-06-29) |
WB [auth Bp] | SCOP2 Family | Ribosomal L38e protein-like | 8049533 | 4006532 | SCOP2 (2022-06-29) |
WB [auth Bp] | SCOP2 Superfamily | Ribosomal L38e protein-like | 8053565 | 3002206 | SCOP2 (2022-06-29) |
XB [auth Bq] | SCOP2 Family | ribosomal protein l39e | 8099553 | 4001518 | SCOP2 (2022-06-29) |
XB [auth Bq] | SCOP2 Superfamily | Ribosomal protein L39e | 8099554 | 3001756 | SCOP2 (2022-06-29) |
YB [auth Br] | SCOP2 Family | 60S ribosomal protein L4 C-terminal domain-like | 8049950 | 4006700 | SCOP2 (2022-06-29) |
YB [auth Br] | SCOP2 Family | Ribosomal protein L4 | 8052836 | 4003628 | SCOP2 (2022-06-29) |
YB [auth Br] | SCOP2 Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052837 | 3002143 | SCOP2 (2022-06-29) |
YB [auth Br] | SCOP2 Superfamily | Ribosomal protein L4 | 8052838 | 3001146 | SCOP2 (2022-06-29) |
ZB [auth Bs] | SCOP2 Family | Ribosomal protein L40e | 8098577 | 4002847 | SCOP2 (2022-06-29) |
ZB [auth Bs] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8098578 | 3001320 | SCOP2 (2022-06-29) |
BC [auth Bu] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8049684 | 4006591 | SCOP2 (2022-06-29) |
BC [auth Bu] | SCOP2 Superfamily | Translational machinery components | 8052881 | 3000571 | SCOP2 (2022-06-29) |
CC [auth Bv] | SCOP2 Family | Ribosomal protein L6e | 8048637 | 4006169 | SCOP2 (2022-06-29) |
CC [auth Bv] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053104 | 3000334 | SCOP2 (2022-06-29) |
DC [auth Bw] | SCOP2 Family | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8050357 | 4006854 | SCOP2 (2022-06-29) |
DC [auth Bw] | SCOP2 Family | Ribosomal protein L30p/L7e | 8052933 | 4001360 | SCOP2 (2022-06-29) |
DC [auth Bw] | SCOP2 Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052934 | 3002152 | SCOP2 (2022-06-29) |
DC [auth Bw] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8052935 | 3001378 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth A0] | Ribosomal_S3Ae_N | e4v8mA01 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
A [auth A0] | Ribosomal_S3Ae_C | e4v8mA02 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
J [auth A9] | Ribosomal_S27 | e4v8mA91 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
K [auth AC] | Ribosomal_S2_2 | e4v8mAC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
L [auth AD] | S10_plectin | e4v8mAD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
M [auth AE] | Ribosomal_S17_1 | e4v8mAE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
N [auth AF] | Ribosomal_L7Ae | e4v8mAF1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
O [auth AG] | Ribosomal_S13_N | e4v8mAG1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (1.6) |
O [auth AG] | Ribosomal_S15_2 | e4v8mAG2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
P [auth AH] | Ribosomal_S11 | e4v8mAH1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
Q [auth AI] | Ribosomal_S19 | e4v8mAI1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
R [auth AJ] | Ribosomal_S8_N_1 | e4v8mAJ1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
R [auth AJ] | Ribosomal_S8_C_1 | e4v8mAJ2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
S [auth AK] | Ribosomal_S9 | e4v8mAK1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
B [auth A1] | Ribosomal_S4e | e4v8mA12 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S4e | ECOD (1.6) |
B [auth A1] | 40S_S4_C | e4v8mA11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 40S_S4_C | ECOD (1.6) |
B [auth A1] | RS4NT | e4v8mA13 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
T [auth AL] | Ribosomal_S17e | e4v8mAL1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
U [auth AM] | Ribosomal_S13 | e4v8mAM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
V [auth AO] | Ribosomal_S19e | e4v8mAO1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
W [auth AP] | Ribosomal_S5_C_1 | e4v8mAP3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C_1 | ECOD (1.6) |
W [auth AP] | Ribosomal_S5_3 | e4v8mAP2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_3 | ECOD (1.6) |
W [auth AP] | Ribosomal_S5_2 | e4v8mAP1 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
X [auth AQ] | Ribosomal_S10_1 | e4v8mAQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
Y [auth AR] | Ribosomal_S21e | e4v8mAR1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: Ribosomal_S21e | ECOD (1.6) |
Z [auth AS] | Ribosom_S12_S23 | e4v8mAS1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
AA [auth AT] | Ribosomal_S24e | e4v8mAT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
BA [auth AU] | Ribosomal_S25 | e4v8mAU1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
CA [auth AV] | Ribosomal_S26e | e4v8mAV1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S26e | ECOD (1.6) |
C [auth A2] | Ribosomal_S7_1 | e4v8mA21 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
DA [auth AW] | Ribosomal_S27e | e4v8mAW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
EA [auth AX] | Ribosomal_S3_C | e4v8mAX2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
EA [auth AX] | KH_2_3 | e4v8mAX1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
FA [auth AY] | Ribosomal_S30 | e4v8mAY1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
GA [auth AZ] | Ribosomal_S28e | e4v8mAZ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
D [auth A3] | Ribosomal_S6e | e4v8mA31 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
PA [auth BI] | Ribosomal_L18 | e4v8mBI1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
QA [auth BJ] | Ribosomal_L1_2nd_1 | e4v8mBJ1 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
QA [auth BJ] | Ribosomal_L1_1st_1 | e4v8mBJ2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
RA [auth BK] | Ribosomal_L16 | e4v8mBK1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
SA [auth BL] | Ribosomal_L5_C | e4v8mBL1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
TA [auth BM] | Ribosomal_L11 | e4v8mBM2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
TA [auth BM] | Ribosomal_L11_N | e4v8mBM1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
UA [auth BN] | Ribosomal_L13e | e4v8mBN1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
VA [auth BO] | Ribosomal_L13 | e4v8mBO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
WA [auth BP] | Ribosomal_L14e | e4v8mBP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
E [auth A4] | Ribosomal_S7e_C | e4v8mA41 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_C | ECOD (1.6) |
E [auth A4] | Ribosomal_S7e_N | e4v8mA42 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_N | ECOD (1.6) |
XA [auth BQ] | Ribosomal_L15e | e4v8mBQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
YA [auth BR] | Ribosomal_L22 | e4v8mBR1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
ZA [auth BS] | Ribosomal_L18A | e4v8mBS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
AB [auth BT] | Ribosomal_L19e_N | e4v8mBT1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
AB [auth BT] | Ribosomal_L19e_C | e4v8mBT2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
BB [auth BU] | Ribosomal_L21e | e4v8mBU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
CB [auth BV] | Ribosomal_L22e | e4v8mBV1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
DB [auth BW] | Ribosomal_L14 | e4v8mBW1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
EB [auth BX] | Ribosomal_L23_3 | e4v8mBX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
FB [auth BY] | Ribosomal_L24e | e4v8mBY1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
GB [auth BZ] | Ribosomal_L26 | e4v8mBZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
F [auth A5] | Ribosomal_S8e | e4v8mA51 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
HB [auth Ba] | Ribosomal_L27e | e4v8mBa1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
IB [auth Bb] | Ribosomal_L18 | e4v8mBb1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
JB [auth Bc] | Ribosomal_L28e | e4v8mBc1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: Ribosomal_L28e | ECOD (1.6) |
KB [auth Bd] | Ribosomal_L29e | e4v8mBd1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
LB [auth Be] | Ribosomal_L2_C_2 | e4v8mBe1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
MB [auth Bf] | Ribosomal_L3 | e4v8mBf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
NB [auth Bg] | Ribosomal_L7Ae | e4v8mBg1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
OB [auth Bh] | Ribosomal_L31e | e4v8mBh1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
PB [auth Bi] | Ribosomal_L32e | e4v8mBi1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
QB [auth Bj] | Ribosomal_L34e | e4v8mBj1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
G [auth A6] | S4 | e4v8mA61 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
RB [auth Bk] | Ribosomal_L29_2 | e4v8mBk1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
SB [auth Bl] | Ribosomal_L35Ae | e4v8mBl1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
TB [auth Bm] | Ribosomal_L36e | e4v8mBm1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
UB [auth Bn] | Ribosomal_L37e | e4v8mBn1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
VB [auth Bo] | Ribosomal_L37ae | e4v8mBo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
WB [auth Bp] | Ribosomal_L38e | e4v8mBp1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
XB [auth Bq] | Ribosomal_L39 | e4v8mBq1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
YB [auth Br] | Ribosomal_L4 | e4v8mBr2 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
ZB [auth Bs] | Ribosomal_L40e | e4v8mBs1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
AC [auth Bt] | Ribosomal_L44 | e4v8mBt1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
H [auth A7] | ANAPC4_WD40_3 | e4v8mA71 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_3 | ECOD (1.6) |
BC [auth Bu] | Ribosomal_L5e | e4v8mBu1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
CC [auth Bv] | Ribosomal_L6e | e4v8mBv1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
DC [auth Bw] | Ribosomal_L30_1 | e4v8mBw1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
EC [auth Bx] | Ribosomal_L7Ae_1 | e4v8mBx1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
FC [auth By] | Ribosomal_L6_2 | e4v8mBy1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
FC [auth By] | Ribosomal_L6 | e4v8mBy2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
I [auth A8] | Ribosomal_S14_2 | e4v8mA81 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth A9] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
K [auth AC] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
L [auth AD] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
M [auth AE] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
M [auth AE] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
N [auth AF] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
O [auth AG] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
P [auth AH] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
Q [auth AI] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
R [auth AJ] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
S [auth AK] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
B [auth A1] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
B [auth A1] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
B [auth A1] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
B [auth A1] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
U [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
V [auth AO] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
W [auth AP] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
W [auth AP] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
Y [auth AR] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
Z [auth AS] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
AA [auth AT] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
C [auth A2] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
DA [auth AW] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
EA [auth AX] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
EA [auth AX] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
FA [auth AY] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
GA [auth AZ] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
HA [auth BA] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
HA [auth BA] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
IA [auth BB] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
JA [auth BC] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
KA [auth BD] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
LA [auth BE] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
D [auth A3] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
NA [auth BG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
OA [auth BH] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
PA [auth BI] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
PA [auth BI] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
QA [auth BJ] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
RA [auth BK] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
SA [auth BL] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
SA [auth BL] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
SA [auth BL] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
TA [auth BM] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
TA [auth BM] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
TA [auth BM] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
UA [auth BN] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
UA [auth BN] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
VA [auth BO] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
VA [auth BO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
WA [auth BP] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
WA [auth BP] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
WA [auth BP] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
E [auth A4] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
XA [auth BQ] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
XA [auth BQ] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
YA [auth BR] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
YA [auth BR] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
ZA [auth BS] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | - | Family |
ZA [auth BS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
AB [auth BT] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
AB [auth BT] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
BB [auth BU] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
CB [auth BV] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
CB [auth BV] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
DB [auth BW] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
DB [auth BW] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
DB [auth BW] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
EB [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
EB [auth BX] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
FB [auth BY] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
FB [auth BY] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
GB [auth BZ] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
GB [auth BZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
F [auth A5] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
G [auth A6] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
G [auth A6] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
H [auth A7] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |