4V88

The structure of the eukaryotic ribosome at 3.0 A resolution.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of the eukaryotic ribosome at 3.0 angstrom resolution.

Ben-Shem, A.Garreau de Loubresse, N.Melnikov, S.Jenner, L.Yusupova, G.Yusupov, M.

(2011) Science 334: 1524-1529

  • DOI: 10.1126/science.1212642
  • Primary Citation of Related Structures:  3U5B, 3U5C, 3U5D, 3U5E, 3U5F, 3U5G, 3U5H, 3U5I

  • PubMed Abstract: 
  • Ribosomes translate genetic information encoded by messenger RNA into proteins. Many aspects of translation and its regulation are specific to eukaryotes, whose ribosomes are much larger and intricate than their bacterial counterparts. We report the ...

    Ribosomes translate genetic information encoded by messenger RNA into proteins. Many aspects of translation and its regulation are specific to eukaryotes, whose ribosomes are much larger and intricate than their bacterial counterparts. We report the crystal structure of the 80S ribosome from the yeast Saccharomyces cerevisiae--including nearly all ribosomal RNA bases and protein side chains as well as an additional protein, Stm1--at a resolution of 3.0 angstroms. This atomic model reveals the architecture of eukaryote-specific elements and their interaction with the universally conserved core, and describes all eukaryote-specific bridges between the two ribosomal subunits. It forms the structural framework for the design and analysis of experiments that explore the eukaryotic translation apparatus and the evolutionary forces that shaped it.


    Organizational Affiliation

    Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch F-67400, France. adam@igbmc.fr




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S0-A
AA, CA
252Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS0A (NAB1, NAB1A, YST1)
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32905
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S1-A
AB, CB
255Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS1A (PLC1, RPS10A)
Find proteins for P33442 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P33442
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S2
AC, CC
254Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS2 (RPS4, SUP38, SUP44)
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS2
Go to UniProtKB:  P25443
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S3
AD, CD
240Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS3 (SUF14)
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS3
Go to UniProtKB:  P05750
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S4-A
AE, CE
261Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS4A (RPS7B)
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX35
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S5
AF, CF
225Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS5 (RPS2)
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS5
Go to UniProtKB:  P26783
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S6-A
AG, CG
236Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS6A (RPS101, RPS10B)
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX37
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S7-A
AH, CH
190Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS7A (RPS30)
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P26786
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S8-A
AI, CI
200Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS8A (RPS14A)
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX39
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S9-A
AJ, CJ
197Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O13516
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S10-A
AK, CK
105Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS10A
Find proteins for Q08745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q08745
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S11-A
AL, CL
156Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS11A (RPS18A)
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX47
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S12
AM, CM
143Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS12
Find proteins for P48589 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS12
Go to UniProtKB:  P48589
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S13
AN, CN
151Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS13
Go to UniProtKB:  P05756
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S14-A
AO, CO
137Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS14A (CRY1, RPL59)
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P06367
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S15
AP, CP
142Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS15 (RPS21)
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS15
Go to UniProtKB:  Q01855
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S16-A
AQ, CQ
143Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS16A (RP61R)
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX51
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S17-A
AR, CR
136Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS17A (RP51A)
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P02407
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S18-A
AS, CS
146Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS18A
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX55
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S19-A
AT, CT
144Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS19A (RP55A, RPS16AA)
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P07280
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S20
AU, CU
121Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS20 (URP2)
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS20
Go to UniProtKB:  P38701
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S21-A
AV, CV
87Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS21A (RPS25, RPS25A, RPS26A)
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0V8
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S22-A
AW, CW
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0W1
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S23-A
AX, CX
145Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS23A (RPS28A)
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX29
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24-A
AY, CY
135Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS24A (RPS24EA)
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX31
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S25-A
AZ, CZ
108Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS25A (RPS31A)
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q3E792
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S26-A
Aa, Ca
119Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS26A (RPS26)
Find proteins for P39938 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P39938
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S27-A
Ab, Cb
82Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS27A
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS27A
Go to UniProtKB:  P35997
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S28-A
Ac, Cc
67Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS28A (RPS33, RPS33A)
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q3E7X9
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S29-A
Ad, Cd
56Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS29A (RPS36A, YS29A)
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P41057
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S30-A
Ae, Ce
63Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS30A
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX33
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S31
Af, Cf
152Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPS31 (RPS37, UBI3)
Find proteins for P05759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05759
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
Guanine nucleotide-binding protein subunit beta-like protein (ASC1, RACK1)
Ag, Cg
319Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: ASC1 (CPC2)
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38011
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
Suppressor protein STM1
Ah
273Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: STM1 (MPT4, STO1)
Find proteins for P39015 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P39015
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L2-A
BA, DA
254Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL2A (RPL5B)
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX45
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L3
BB, DB
387Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL3 (MAK8, TCM1)
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL3
Go to UniProtKB:  P14126
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L4-A
BC, DC
362Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL4A (RPL2, RPL2A)
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P10664
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L5
BD, DD
297Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL5 (RPL1, RPL1A)
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL5
Go to UniProtKB:  P26321
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L6-A
BE, DE
176Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL6A (RPL17A, YL16A)
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02326
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L7-A
BF, DF
244Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL7A (RPL6A, RPL8A, YL8A)
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL7A
Go to UniProtKB:  P05737
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L8-A
BG, DG
256Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL8A (MAK7, RPL4A)
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P17076
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L9-A
BH, DH
191Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL9A (RPL8A, RPL9)
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05738
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L10
BI, DI
221Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL10 (GRC5, QSR1)
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL10
Go to UniProtKB:  P41805
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L11-A
BJ, DJ
174Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL11A (RP39A, RPL16A)
Find proteins for P0C0W9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0W9
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L13-A
BL, DL
199Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL13A
Find proteins for Q12690 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL13A
Go to UniProtKB:  Q12690
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L14-A
BM, DM
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL14A
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P36105
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L15-A
BN, DN
204Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL15A (RPL10A, RPL13A, YL10A)
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05748
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L16-A, 60S ribosomal protein L16-B
BO, DO
199Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL16A (RPL13, RPL21A)
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P26784
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L17-A
BP, DP
184Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL17A (RPL17, RPL20A)
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05740
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L18-A
BQ, DQ
186Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL18A (RP28A)
Find proteins for P0CX49 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL18A
Go to UniProtKB:  P0CX49
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L19-A
BR, DR
189Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL19A (RPL23A, YL14A)
Find proteins for P0CX82 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX82
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L20-A
BS, DS
172Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL20A (RPL18A, RPL18A2)
Find proteins for P0CX23 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX23
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L21-A
BT, DT
160Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL21A (URP1)
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02753
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L22-A
BU, DU
121Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL22A
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05749
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L23-A
BV, DV
137Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL23A (RPL17A, RPL17AA)
Find proteins for P0CX41 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL23A
Go to UniProtKB:  P0CX41
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L24-A
BW, DW
155Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL24A (RP29, RPL30A)
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P04449
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L25
BX, DX
142Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL25
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P04456
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L26-A
BY, DY
127Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL26A (RPL26, RPL33A)
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05743
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L27-A
BZ, DZ
136Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL27A (RPL27)
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL27A
Go to UniProtKB:  P0C2H6
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L28
Ba, Da
149Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL28 (CYH2)
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL28
Go to UniProtKB:  P02406
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L29
Bb, Db
59Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL29 (YL43)
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL29
Go to UniProtKB:  P05747
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L30
Bc, Dc
105Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL30 (RPL32)
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL30
Go to UniProtKB:  P14120
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L31-A
Bd, Dd
113Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL31A (RPL34, RPL34A)
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C2H8
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L32
Be, De
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL32
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL32
Go to UniProtKB:  P38061
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L33-A
Bf, Df
107Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL33A (RPL37A)
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05744
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L34-A
Bg, Dg
121Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL34A
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P87262
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L35-A
Bh, Dh
120Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL35A (SOS1)
Find proteins for P0CX84 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL35A
Go to UniProtKB:  P0CX84
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L36-A
Bi, Di
100Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL36A (RPL39A)
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL36A
Go to UniProtKB:  P05745
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L37-A
Bj, Dj
88Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL37A (RPL35A)
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL37A
Go to UniProtKB:  P49166
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L38
Bk, Dk
78Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL38
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL38
Go to UniProtKB:  P49167
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L39
Bl, Dl
51Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL39 (RPL46, SPB2)
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL39
Go to UniProtKB:  P04650
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L40
Bm, Dm
128Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL40A (UBI1)
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CH08
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L41-A
Bn, Dn
25Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL41A (RPL47A, YL41A)
Find proteins for P0CX86 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX86
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L42-A
Bo, Do
106Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL42A (RPL41A, SCL41A)
Find proteins for P0CX27 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX27
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein L43-A
Bp, Dp
92Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPL43A
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX25
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
Suppressor protein STM1
Ch
273N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein L12
DK
155N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein P0
Dq
312Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Gene Names: RPP0 (L10E, RPA0, RPL10E, RPLA0)
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05317
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein P1 alpha
Dr
47N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 85
MoleculeChainsSequence LengthOrganismDetails
Ribosomal protein P2 beta
Ds
46N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 1
MoleculeChainsLengthOrganism
18S RIBOSOMAL RNAA21800Saccharomyces cerevisiae
Entity ID: 36
MoleculeChainsLengthOrganism
25S rRNAA1,A53396Saccharomyces cerevisiae
Entity ID: 37
MoleculeChainsLengthOrganism
5S rRNAA3,A7121Saccharomyces cerevisiae
Entity ID: 38
MoleculeChainsLengthOrganism
5.8S rRNAA4,A8158Saccharomyces cerevisiae
Entity ID: 80
MoleculeChainsLengthOrganism
18S rRNAA61800Saccharomyces cerevisiae
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
Aa, Ab, Ad, Af, Bj, Bm, Bo, Bp, Ca, Cb, Cd, Cf, Dj, Dm, Do, Dp
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
OHX
Query on OHX

Download SDF File 
Download CCD File 
A1, A2, A3, A4, A5, A6, A7, A8, AC, Ad, Ag, AI, AL, AN, AP, BA, Bb, BB, BC, BD, Bf, BI, Bj, BN, BO, Bo, BP, BR, BT, CB, Cd, Cg, CG, CI, CJ, CL, CN, CP, CS, CY, DA, Db, DB, DC, DD, De, Df, DG, Dg, Dh, DH, DI, Dj, DJ, DM, DO, Do, DP, DQ, DR, DV
osmium (III) hexammine
osmium(6+) hexaazanide
H12 N6 Os
OWCQTVJQFLTQTE-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A1, A2, A3, A4, A5, A6, A7, A8, Aa, AB, AC, Ad, AE, Af, AI, AJ, AL, AN, AP, AS, AX, BA, Ba, BB, BC, Bd, BD, BE, Be, BF, Bf, Bg, BG, BI, BJ, Bj, Bl, BL, Bm, BN, Bo, BO, BP, BQ, BR, BS, BT, BV, BY, Ca, CB, Cd, CE, CF, CG, Ch, CI, CL, CP, CQ, CS, CX, CY, CZ, Da, DA, Db, DB, DC, DD, Dd, De, DF, Df, DG, Dg, DH, DJ, Dj, Dl, DL, Dm, DM, DN, Dn, Do, DO, DP, Dp, Dq, DQ, DR, DS, DT, DV, DW, DY
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
Af, Ah, Cf, Ch, DK, Dq, Dr, Ds
L-PEPTIDE LINKINGC4 H9 N O2

--

N
Query on N
A2, A6
RNA LINKINGC5 H11 O7 P

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.181 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 436.430α = 90.00
b = 288.220β = 98.99
c = 305.080γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Other
  • Version 1.2: 2017-06-21
    Type: Database references