Biological Assembly 1  

 3D View: Structure

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 79-mer - A3B2C2D2EFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUV Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 79-mer -A4B4C2DEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRST 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 3104129.50 
• Atom Count: 191627 
• Residue Count: 17383 
• Unique protein chains: 77
• Unique nucleic acid chains: 6

4V6I

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

• DOI: 10.2210/pdb4V6I/pdb
• Entry 4V6I supersedes 3IZB, 3IZS, 3IZE, 3IZF
• EMDataResource: EMD-1669

• Classification: RIBOSOME
• Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Saccharomyces cerevisiae, Oryza sativa subsp. japonica


• Deposited: 2010-10-12 Released: 2014-07-09 
• Deposition Author(s): Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 8.8 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache, J.P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soding, J., Westhof, E., Wilson, D.N., Beckmann, R.

(2010) Proc.Natl.Acad.Sci.USA 107: 19748-19753

• PubMed: 20980660 
• DOI: 10.1073/pnas.1009999107
• Primary Citation of Related Structures:  
  3IZS, 3IZF, 3IZE, 3IZD, 3IZC, 3IZB
• Also Cited By: 4V7E, 3J62, 3J61, 3J60, 3J5Z, 3IZR, 3IZ9, 3IZ7, 3IZ6, 3IZ5


• PubMed Abstract: 
  

Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

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Related Citations: 

• Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome.
  Armache, J.P.,Jarasch, A.,Anger, A.M.,Villa, E.,Becker, T.,Bhushan, S.,Jossinet, F.,Habeck, M.,Dindar, G.,Franckenberg, S.,Marquez, V.,Mielke, T.,Thomm, M.,Berninghausen, O.,Beatrix, B.,Soding, J.,Westhof, E.,Wilson, D.N.,Beckmann, R.
  (2010) Proc.Natl.Acad.Sci.USA 107: 19754




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Organizational Affiliation: 

Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein RACK1 (RACK1)	Aa	319	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: ASC1 (CPC2)
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P38011

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS0 (S2p)	AA	252	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS0A (NAB1, NAB1A, YST1)
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P32905

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS3 (S3p)	AB	240	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS3 (SUF14)
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS3 Go to UniProtKB:  P05750

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS4 (S4e)	AD	261	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS4B (RPS7A)
Find proteins for P0CX36 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX36

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS9 (S4p)	AC	197	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  O13516

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS2 (S5p)	AE	254	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS2 (RPS4, SUP38, SUP44)
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS2 Go to UniProtKB:  P25443

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS7 (S7e)	AG	144	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS5 (S7p)	AF	225	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS5 (RPS2)
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS5 Go to UniProtKB:  P26783

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS22 (S8p)	AH	130	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0W1

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS16 (S9p)	AI	143	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS16B
Find proteins for P0CX52 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX52

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS20 (S10p)	AJ	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS20 (URP2)
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS20 Go to UniProtKB:  P38701

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS14 (S11p)	AK	137	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS14A (CRY1, RPL59)
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P06367

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS23 (S12p)	AL	145	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS23A (RPS28A)
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX29

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS18 (S13p)	AM	146	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS18B
Find proteins for P0CX56 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX56

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS29 (S14p)	AN	56	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS29A (RPS36A, YS29A)
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P41057

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS13 (S15p)	AO	151	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS13 Go to UniProtKB:  P05756

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS17 (S17e)	AQ	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS17A (RP51A)
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P02407

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS11 (S17p)	AP	156	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS11B (RPS18B)
Find proteins for P0CX48 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX48

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS15 (S19p)	AR	142	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS15 (RPS21)
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS15 Go to UniProtKB:  Q01855

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS19 (S19e)	AS	144	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS19A (RP55A, RPS16AA)
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P07280

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS21 (S21e)	AT	87	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS21A (RPS25, RPS25A, RPS26A)
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0V8

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS25 (S25e)	AV	108	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS25A (RPS31A)
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E792

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS26 (S26e)	AW	93	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS27 (S27e)	AX	82	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS27A
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPS27A Go to UniProtKB:  P35997

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS28 (S28e)	AY	67	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS28A (RPS33, RPS33A)
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q3E7X9

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein rpS30 (S30e)	AZ	63	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS30A
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX33

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details
Unknown 40S ribosomal protein XS1	Ab	37	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details
Unknown 40S ribosomal protein XS2	Ac	26	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details
40S ribosomal protein S24	AU	135	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPS24B (RPS24EB)
Find proteins for P0CX32 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX32

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL1 (L1p)	BA	217	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL1A (SSM1, SSM1A)
Find proteins for P0CX43 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX43

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL2 (L2p)	BB	254	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL2A (RPL5B)
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX45

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL3 (L3p)	BC	388	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL3 (MAK8, TCM1)
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL3 Go to UniProtKB:  P14126

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL4 (L4p)	BD	362	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL4A (RPL2, RPL2A)
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P10664

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL11 (L5p)	BE	174	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL11A (RP39A, RPL16A)
Find proteins for P0C0W9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C0W9

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL6 (L6e)	BG	176	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL6A (RPL17A, YL16A)
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02326

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL9 (L6p)	BF	191	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL9A (RPL8A, RPL9)
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05738

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL8 (L7ae)	BH	256	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL8A (MAK7, RPL4A)
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P17076

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details
60S acidic ribosomal protein rpP0 (L10P)	Bs	312	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPP0 (L10E, RPA0, RPL10E, RPLA0)
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05317

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL12 (L11p)	BJ	165	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL12A (RPL15B)
Find proteins for P0CX53 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX53

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL16 (L13p)	BK	199	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL16A (RPL13, RPL21A)
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P26784

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL14 (L14e)	BN	138	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL14A
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P36105

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL23 (L14p)	BM	137	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL23B (RPL17AB, RPL17B)
Find proteins for P0CX42 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX42

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL15 (L15e)	BP	204	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL15A (RPL10A, RPL13A, YL10A)
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05748

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL28 (L15p)	BO	149	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL28 (CYH2)
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL28 Go to UniProtKB:  P02406

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL18 (L18e)	BR	186	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL18B (RP28B)
Find proteins for P0CX50 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX50

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL19 (L19e)	BT	189	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL19B (RPL23B, YL14B)
Find proteins for P0CX83 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX83

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL21 (L21e)	BU	160	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL21A (URP1)
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  Q02753

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL22 (L22e)	BW	121	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL22A
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05749

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL17 (L22p)	BV	170	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL17A (RPL17, RPL20A)
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05740

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL25 (L23p)	BX	142	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL25
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04456

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL24 (L24e)	BZ	155	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL24A (RP29, RPL30A)
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P04449

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL26 (L24p)	BY	123	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL26A (RPL26, RPL33A)
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05743

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL27 (L27e)	Ba	136	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL27A (RPL27)
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL27A Go to UniProtKB:  P0C2H6

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL29 (L29e)	Bd	59	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL29 (YL43)
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL29 Go to UniProtKB:  P05747

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL35 (L29p)	Bc	120	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL35B (SOS2)
Find proteins for P0CX85 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX85

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL30 (L30e)	Bf	105	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL30 (RPL32)
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL30 Go to UniProtKB:  P14120

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL7 (L30p)	Be	244	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL7A (RPL6A, RPL8A, YL8A)
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL7A Go to UniProtKB:  P05737

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL31 (L31e)	Bg	113	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL31A (RPL34, RPL34A)
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0C2H8

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein pL32 (L32e)	Bh	130	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL32
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL32 Go to UniProtKB:  P38061

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL34 (L34e)	Bi	118	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL34A
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P87262

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL33 (L35ae)	Bj	107	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL33A (RPL37A)
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05744

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL36 (L36e)	Bk	100	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL36A (RPL39A)
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL36A Go to UniProtKB:  P05745

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL43 (L37ae)	Bm	92	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL43A
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX25

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL37 (L37e)	Bl	88	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL37A (RPL35A)
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL37A Go to UniProtKB:  P49166

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL38 (L38e)	Bn	78	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL38
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL38 Go to UniProtKB:  P49167

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL39 (L39e)	Bo	51	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL39 (RPL46, SPB2)
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL39 Go to UniProtKB:  P04650

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL40 (L40e)	Bp	52	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL40A (UBI1)
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CH08

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL41 (L41e)	Bq	25	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL41B (RPL47B, YL41B)
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX87

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL42 (L44e)	Br	106	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL42B (MAK18, RPL41B, SCL41B)
Find proteins for P0CX28 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P0CX28

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details
Unknown protein	Bx, By	21	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details
Unknown protein	Bz	15	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details
60S acidic ribosomal protein rpP11 (P1)	Bt, Bu	106	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPP1A (L12EIIA, RPA1, RPLA1)
Find proteins for P05318 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05318

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details
60S acidic ribosomal protein (P2)	Bv, Bw	106	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPP2A (L12EIB, RPA2, RPL44, RPLA2)
Find proteins for P05319 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB:  P05319

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL5 (L18p)	BQ	297	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL5 (RPL1, RPL1A)
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL5 Go to UniProtKB:  P26321

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL13 (L13e)	BL	170	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL20 (L18ae)	BS	167	Oryza sativa subsp. japonica	Mutation(s): 0  Gene Names: RPL18A
Find proteins for Q943F3 (Oryza sativa subsp. japonica) Go to Gene View: RPL18A Go to UniProtKB:  Q943F3

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details
60S ribosomal protein rpL10 (L10e)	BI	221	Saccharomyces cerevisiae (strain ATCC 204508 / S288c)	Mutation(s): 0  Gene Names: RPL10 (GRC5, QSR1)
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: RPL10 Go to UniProtKB:  P41805

Entity ID: 78
Molecule	Chains	Length	Organism
18S rRNA	CA	1800	Saccharomyces cerevisiae

Entity ID: 79
Molecule	Chains	Length	Organism
P-SITE TRNA ASP	CB	75	Saccharomyces cerevisiae

Entity ID: 80
Molecule	Chains	Length	Organism
MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')	CC	11	Saccharomyces cerevisiae

Entity ID: 81
Molecule	Chains	Length	Organism
25S rRNA	DA	3396	Saccharomyces cerevisiae

Entity ID: 82
Molecule	Chains	Length	Organism
5.8S rRNA	DB	158	Saccharomyces cerevisiae

Entity ID: 83
Molecule	Chains	Length	Organism
5S rRNA	DC	118	Saccharomyces cerevisiae

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
UNK	Ab, Ac, AG, AW, BL, Bx, By, Bz	L-PEPTIDE LINKING	C4 H9 N O2		--

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 8.8 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2010-10-12 
• Released Date: 2014-07-09 
• Deposition Author(s): Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
• This entry supersedes: 3IZB 3IZS 3IZE 3IZF

Revision History 

• Version 1.0: 2014-07-09
  Type: Initial release
• Version 1.1: 2014-12-10
  Type: Other
• Version 1.2: 2015-03-25
  Type: Other