4V6I | pdb_00004v6i

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

• PDB DOI: https://doi.org/10.2210/pdb4V6I/pdb
• Entry: 4V6I supersedes: 3IZB, 3IZS, 3IZE, 3IZF
• EM Map EMD-1669: EMDB EMDataResource
• NAKB: 4V6I

• Classification: RIBOSOME
• Organism(s): Saccharomyces cerevisiae
• Mutation(s): No 


• Deposited: 2010-10-12 Released: 2014-07-09 
• Deposition Author(s): Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 8.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache, J.P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soding, J., Westhof, E., Wilson, D.N., Beckmann, R.

(2010) Proc Natl Acad Sci U S A 107: 19748-19753

• PubMed: 20980660 
• DOI: https://doi.org/10.1073/pnas.1009999107
• Primary Citation of Related Structures:  
  3IZD, 4V6I


• PubMed Abstract: 
  

  Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

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Organizational Affiliation: 

Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 72-mer - AA2AB2AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 72-mer - AA4AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3,104.13 kDa 
• Atom Count: 191,627 
• Modeled Residue Count: 16,104 
• Deposited Residue Count: 17,383 
• Unique protein chains: 77
• Unique nucleic acid chains: 6

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein RACK1 (RACK1)	A [auth Aa]	319	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38011  Go to UniProtKB:  P38011

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS0 (S2p)	B [auth AA]	252	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32905  Go to UniProtKB:  P32905

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS3 (S3p)	C [auth AB]	240	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05750  Go to UniProtKB:  P05750

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS4 (S4e)	D [auth AD]	261	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS9 (S4p)	E [auth AC]	197	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O13516  Go to UniProtKB:  O13516

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS2 (S5p)	F [auth AE]	254	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25443  Go to UniProtKB:  P25443

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS7 (S7e)	G [auth AG]	144	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS5 (S7p)	H [auth AF]	225	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26783  Go to UniProtKB:  P26783

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS22 (S8p)	I [auth AH]	130	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W1  Go to UniProtKB:  P0C0W1

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS16 (S9p)	J [auth AI]	143	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS20 (S10p)	K [auth AJ]	121	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38701  Go to UniProtKB:  P38701

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS14 (S11p)	L [auth AK]	137	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P06367  Go to UniProtKB:  P06367

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS23 (S12p)	M [auth AL]	145	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS18 (S13p)	N [auth AM]	146	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS29 (S14p)	O [auth AN]	56	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41057  Go to UniProtKB:  P41057

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS13 (S15p)	P [auth AO]	151	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05756  Go to UniProtKB:  P05756

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS17 (S17e)	Q [auth AQ]	136	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02407  Go to UniProtKB:  P02407

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS11 (S17p)	R [auth AP]	156	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS15 (S19p)	S [auth AR]	142	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01855  Go to UniProtKB:  Q01855

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS19 (S19e)	T [auth AS]	144	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07280  Go to UniProtKB:  P07280

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS21 (S21e)	U [auth AT]	87	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0V8  Go to UniProtKB:  P0C0V8

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS25 (S25e)	V [auth AV]	108	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E792  Go to UniProtKB:  Q3E792

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS26 (S26e)	W [auth AW]	93	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS27 (S27e)	X [auth AX]	82	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35997  Go to UniProtKB:  P35997

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS28 (S28e)	Y [auth AY]	67	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q3E7X9  Go to UniProtKB:  Q3E7X9

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein rpS30 (S30e)	Z [auth AZ]	63	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown 40S ribosomal protein XS1	AA [auth Ab]	37	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown 40S ribosomal protein XS2	BA [auth Ac]	26	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	CA [auth AU]	135	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL1 (L1p)	DA [auth BA]	217	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL2 (L2p)	EA [auth BB]	254	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL3 (L3p)	FA [auth BC]	388	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14126  Go to UniProtKB:  P14126

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL4 (L4p)	GA [auth BD]	362	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10664  Go to UniProtKB:  P10664

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL11 (L5p)	HA [auth BE]	174	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0C0W9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C0W9  Go to UniProtKB:  P0C0W9

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL6 (L6e)	IA [auth BG]	176	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02326  Go to UniProtKB:  Q02326

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL9 (L6p)	JA [auth BF]	191	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05738  Go to UniProtKB:  P05738

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL8 (L7ae)	KA [auth BH]	256	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P17076  Go to UniProtKB:  P17076

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein rpP0 (L10P)	LA [auth Bs]	312	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05317  Go to UniProtKB:  P05317

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL12 (L11p)	MA [auth BJ]	165	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL16 (L13p)	NA [auth BK]	199	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26784  Go to UniProtKB:  P26784

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL14 (L14e)	OA [auth BN]	138	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36105  Go to UniProtKB:  P36105

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL23 (L14p)	PA [auth BM]	137	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL15 (L15e)	QA [auth BP]	204	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05748  Go to UniProtKB:  P05748

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL28 (L15p)	RA [auth BO]	149	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02406  Go to UniProtKB:  P02406

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL18 (L18e)	SA [auth BR]	186	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL19 (L19e)	TA [auth BT]	189	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL21 (L21e)	UA [auth BU]	160	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02753  Go to UniProtKB:  Q02753

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL22 (L22e)	VA [auth BW]	121	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05749  Go to UniProtKB:  P05749

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL17 (L22p)	WA [auth BV]	170	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05740  Go to UniProtKB:  P05740

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL25 (L23p)	XA [auth BX]	142	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04456  Go to UniProtKB:  P04456

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL24 (L24e)	YA [auth BZ]	155	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04449  Go to UniProtKB:  P04449

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL26 (L24p)	ZA [auth BY]	123	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05743  Go to UniProtKB:  P05743

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL27 (L27e)	AB [auth Ba]	136	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H6  Go to UniProtKB:  P0C2H6

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL29 (L29e)	BB [auth Bd]	59	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05747  Go to UniProtKB:  P05747

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL35 (L29p)	CB [auth Bc]	120	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL30 (L30e)	DB [auth Bf]	105	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14120  Go to UniProtKB:  P14120

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL7 (L30p)	EB [auth Be]	244	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05737  Go to UniProtKB:  P05737

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL31 (L31e)	FB [auth Bg]	113	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0C2H8  Go to UniProtKB:  P0C2H8

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein pL32 (L32e)	GB [auth Bh]	130	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38061  Go to UniProtKB:  P38061

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL34 (L34e)	HB [auth Bi]	118	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P87262  Go to UniProtKB:  P87262

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL33 (L35ae)	IB [auth Bj]	107	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05744  Go to UniProtKB:  P05744

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL36 (L36e)	JB [auth Bk]	100	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05745  Go to UniProtKB:  P05745

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL43 (L37ae)	KB [auth Bm]	92	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL37 (L37e)	LB [auth Bl]	88	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49166  Go to UniProtKB:  P49166

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL38 (L38e)	MB [auth Bn]	78	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P49167  Go to UniProtKB:  P49167

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL39 (L39e)	NB [auth Bo]	51	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P04650  Go to UniProtKB:  P04650

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL40 (L40e)	OB [auth Bp]	52	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P0CH08  Go to UniProtKB:  P0CH08

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL41 (L41e)	PB [auth Bq]	25	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL42 (L44e)	QB [auth Br]	106	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown protein	RB [auth Bx], SB [auth By]	21	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
Unknown protein	TB [auth Bz]	15	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein rpP11 (P1)	UB [auth Bt], VB [auth Bu]	106	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05318 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05318  Go to UniProtKB:  P05318

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein (P2)	WB [auth Bv], XB [auth Bw]	106	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P05319 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P05319  Go to UniProtKB:  P05319

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL5 (L18p)	YB [auth BQ]	297	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P26321  Go to UniProtKB:  P26321

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL13 (L13e)	ZB [auth BL]	170	Saccharomyces cerevisiae	Mutation(s): 0

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL20 (L18ae)	AC [auth BS]	167	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q943F3 (Oryza sativa subsp. japonica) Explore Q943F3  Go to UniProtKB:  Q943F3

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein rpL10 (L10e)	BC [auth BI]	221	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41805  Go to UniProtKB:  P41805

Entity ID: 78
Molecule	Chains	Length	Organism	Image
18S rRNA	CC [auth CA]	1,800	Saccharomyces cerevisiae

Entity ID: 79
Molecule	Chains	Length	Organism	Image
P-SITE TRNA ASP	DC [auth CB]	75	Saccharomyces cerevisiae

Entity ID: 80
Molecule	Chains	Length	Organism	Image
MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')	EC [auth CC]	11	Saccharomyces cerevisiae

Entity ID: 81
Molecule	Chains	Length	Organism	Image
25S rRNA	FC [auth DA]	3,396	Saccharomyces cerevisiae

Entity ID: 82
Molecule	Chains	Length	Organism	Image
5.8S rRNA	GC [auth DB]	158	Saccharomyces cerevisiae

Entity ID: 83
Molecule	Chains	Length	Organism	Image
5S rRNA	HC [auth DC]	118	Saccharomyces cerevisiae

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 8.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-07-09 
Deposition Author(s): Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
• This entry supersedes: 3IZB, 3IZS, 3IZE, 3IZF

Revision History  

• Version 1.0: 2014-07-09
  Type: Initial release
  
• Version 1.1: 2014-12-10
  Changes: Other
• Version 1.2: 2015-03-25
  Changes: Other
• Version 1.3: 2019-12-18
  Changes: Data collection, Database references, Other
• Version 1.4: 2024-02-28
  Changes: Data collection, Database references