4V6I

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache, J.P.Jarasch, A.Anger, A.M.Villa, E.Becker, T.Bhushan, S.Jossinet, F.Habeck, M.Dindar, G.Franckenberg, S.Marquez, V.Mielke, T.Thomm, M.Berninghausen, O.Beatrix, B.Soding, J.Westhof, E.Wilson, D.N.Beckmann, R.

(2010) Proc.Natl.Acad.Sci.USA 107: 19748-19753

  • DOI: 10.1073/pnas.1009999107
  • Primary Citation of Related Structures:  
  • Also Cited By: 4V7E, 3J62, 3J61, 3J60, 3J5Z, 3IZR, 3IZ9, 3IZ7, 3IZ6, 3IZ5

  • PubMed Abstract: 
  • Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosome ...

    Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.


    Related Citations: 
    • Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome.
      Armache, J.P.,Jarasch, A.,Anger, A.M.,Villa, E.,Becker, T.,Bhushan, S.,Jossinet, F.,Habeck, M.,Dindar, G.,Franckenberg, S.,Marquez, V.,Mielke, T.,Thomm, M.,Berninghausen, O.,Beatrix, B.,Soding, J.,Westhof, E.,Wilson, D.N.,Beckmann, R.
      (2010) Proc.Natl.Acad.Sci.USA 107: 19754


    Organizational Affiliation

    Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein RACK1 (RACK1)
Aa
319Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ASC1 (CPC2)
Find proteins for P38011 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P38011
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS0 (S2p)
AA
252Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS0A (NAB1, NAB1A, YST1)
Find proteins for P32905 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P32905
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS3 (S3p)
AB
240Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS3 (SUF14)
Find proteins for P05750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS3
Go to UniProtKB:  P05750
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS4 (S4e)
AD
261Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS4B (RPS7A)
Find proteins for P0CX36 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX36
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS9 (S4p)
AC
197Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS9A (RPS13A, YS11A)
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O13516
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS2 (S5p)
AE
254Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS2 (RPS4, SUP38, SUP44)
Find proteins for P25443 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS2
Go to UniProtKB:  P25443
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS7 (S7e)
AG
144N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS5 (S7p)
AF
225Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS5 (RPS2)
Find proteins for P26783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS5
Go to UniProtKB:  P26783
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS22 (S8p)
AH
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS22A (RPS24, RPS24A)
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0W1
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS16 (S9p)
AI
143Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS16B
Find proteins for P0CX52 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX52
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS20 (S10p)
AJ
121Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS20 (URP2)
Find proteins for P38701 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS20
Go to UniProtKB:  P38701
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS14 (S11p)
AK
137Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS14A (CRY1, RPL59)
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P06367
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS23 (S12p)
AL
145Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS23A (RPS28A)
Find proteins for P0CX29 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX29
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS18 (S13p)
AM
146Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS18B
Find proteins for P0CX56 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX56
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS29 (S14p)
AN
56Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS29A (RPS36A, YS29A)
Find proteins for P41057 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P41057
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS13 (S15p)
AO
151Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS13 (RPS13C)
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS13
Go to UniProtKB:  P05756
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS17 (S17e)
AQ
136Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS17A (RP51A)
Find proteins for P02407 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P02407
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS11 (S17p)
AP
156Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS11B (RPS18B)
Find proteins for P0CX48 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX48
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS15 (S19p)
AR
142Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS15 (RPS21)
Find proteins for Q01855 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS15
Go to UniProtKB:  Q01855
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS19 (S19e)
AS
144Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS19A (RP55A, RPS16AA)
Find proteins for P07280 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P07280
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS21 (S21e)
AT
87Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS21A (RPS25, RPS25A, RPS26A)
Find proteins for P0C0V8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0V8
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS25 (S25e)
AV
108Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS25A (RPS31A)
Find proteins for Q3E792 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q3E792
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS26 (S26e)
AW
93N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS27 (S27e)
AX
82Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS27A
Find proteins for P35997 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPS27A
Go to UniProtKB:  P35997
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS28 (S28e)
AY
67Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS28A (RPS33, RPS33A)
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q3E7X9
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein rpS30 (S30e)
AZ
63Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS30A
Find proteins for P0CX33 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX33
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
Unknown 40S ribosomal protein XS1
Ab
37N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
Unknown 40S ribosomal protein XS2
Ac
26N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
40S ribosomal protein S24
AU
135Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPS24B (RPS24EB)
Find proteins for P0CX32 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX32
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL1 (L1p)
BA
217Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL1A (SSM1, SSM1A)
Find proteins for P0CX43 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX43
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL2 (L2p)
BB
254Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL2A (RPL5B)
Find proteins for P0CX45 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX45
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL3 (L3p)
BC
388Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL3 (MAK8, TCM1)
Find proteins for P14126 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL3
Go to UniProtKB:  P14126
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL4 (L4p)
BD
362Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL4A (RPL2, RPL2A)
Find proteins for P10664 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P10664
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL11 (L5p)
BE
174Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL11A (RP39A, RPL16A)
Find proteins for P0C0W9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C0W9
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL6 (L6e)
BG
176Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL6A (RPL17A, YL16A)
Find proteins for Q02326 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02326
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL9 (L6p)
BF
191Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL9A (RPL8A, RPL9)
Find proteins for P05738 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05738
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL8 (L7ae)
BH
256Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL8A (MAK7, RPL4A)
Find proteins for P17076 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P17076
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein rpP0 (L10P)
Bs
312Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPP0 (L10E, RPA0, RPL10E, RPLA0)
Find proteins for P05317 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05317
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL12 (L11p)
BJ
165Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL12A (RPL15B)
Find proteins for P0CX53 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX53
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL16 (L13p)
BK
199Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL16A (RPL13, RPL21A)
Find proteins for P26784 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P26784
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL14 (L14e)
BN
138Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL14A
Find proteins for P36105 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P36105
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL23 (L14p)
BM
137Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL23B (RPL17AB, RPL17B)
Find proteins for P0CX42 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX42
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL15 (L15e)
BP
204Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL15A (RPL10A, RPL13A, YL10A)
Find proteins for P05748 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05748
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL28 (L15p)
BO
149Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL28 (CYH2)
Find proteins for P02406 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL28
Go to UniProtKB:  P02406
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL18 (L18e)
BR
186Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL18B (RP28B)
Find proteins for P0CX50 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX50
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL19 (L19e)
BT
189Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL19B (RPL23B, YL14B)
Find proteins for P0CX83 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX83
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL21 (L21e)
BU
160Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL21A (URP1)
Find proteins for Q02753 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q02753
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL22 (L22e)
BW
121Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL22A
Find proteins for P05749 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05749
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL17 (L22p)
BV
170Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL17A (RPL17, RPL20A)
Find proteins for P05740 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05740
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL25 (L23p)
BX
142Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL25
Find proteins for P04456 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL24 (L24e)
BZ
155Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL24A (RP29, RPL30A)
Find proteins for P04449 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P04449
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL26 (L24p)
BY
123Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL26A (RPL26, RPL33A)
Find proteins for P05743 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05743
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL27 (L27e)
Ba
136Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL27A (RPL27)
Find proteins for P0C2H6 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL27A
Go to UniProtKB:  P0C2H6
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL29 (L29e)
Bd
59Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL29 (YL43)
Find proteins for P05747 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL29
Go to UniProtKB:  P05747
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL35 (L29p)
Bc
120Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL35B (SOS2)
Find proteins for P0CX85 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX85
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL30 (L30e)
Bf
105Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL30 (RPL32)
Find proteins for P14120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL30
Go to UniProtKB:  P14120
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL7 (L30p)
Be
244Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL7A (RPL6A, RPL8A, YL8A)
Find proteins for P05737 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL7A
Go to UniProtKB:  P05737
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL31 (L31e)
Bg
113Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL31A (RPL34, RPL34A)
Find proteins for P0C2H8 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0C2H8
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein pL32 (L32e)
Bh
130Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL32
Find proteins for P38061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL32
Go to UniProtKB:  P38061
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL34 (L34e)
Bi
118Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL34A
Find proteins for P87262 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P87262
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL33 (L35ae)
Bj
107Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL33A (RPL37A)
Find proteins for P05744 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05744
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL36 (L36e)
Bk
100Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL36A (RPL39A)
Find proteins for P05745 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL36A
Go to UniProtKB:  P05745
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL43 (L37ae)
Bm
92Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL43A
Find proteins for P0CX25 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX25
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL37 (L37e)
Bl
88Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL37A (RPL35A)
Find proteins for P49166 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL37A
Go to UniProtKB:  P49166
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL38 (L38e)
Bn
78Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL38
Find proteins for P49167 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL38
Go to UniProtKB:  P49167
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL39 (L39e)
Bo
51Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL39 (RPL46, SPB2)
Find proteins for P04650 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL39
Go to UniProtKB:  P04650
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL40 (L40e)
Bp
52Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL40A (UBI1)
Find proteins for P0CH08 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CH08
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL41 (L41e)
Bq
25Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL41B (RPL47B, YL41B)
Find proteins for P0CX87 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX87
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL42 (L44e)
Br
106Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL42B (MAK18, RPL41B, SCL41B)
Find proteins for P0CX28 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P0CX28
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
Unknown protein
Bx, By
21N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
Unknown protein
Bz
15N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein rpP11 (P1)
Bt, Bu
106Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPP1A (L12EIIA, RPA1, RPLA1)
Find proteins for P05318 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05318
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
60S acidic ribosomal protein (P2)
Bv, Bw
106Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPP2A (L12EIB, RPA2, RPL44, RPLA2)
Find proteins for P05319 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P05319
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL5 (L18p)
BQ
297Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL5 (RPL1, RPL1A)
Find proteins for P26321 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL5
Go to UniProtKB:  P26321
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL13 (L13e)
BL
170N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL20 (L18ae)
BS
167Oryza sativa subsp. japonicaMutation(s): 0 
Gene Names: RPL18A
Find proteins for Q943F3 (Oryza sativa subsp. japonica)
Go to Gene View: RPL18A
Go to UniProtKB:  Q943F3
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
60S ribosomal protein rpL10 (L10e)
BI
221Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: RPL10 (GRC5, QSR1)
Find proteins for P41805 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: RPL10
Go to UniProtKB:  P41805
Entity ID: 78
MoleculeChainsLengthOrganism
18S rRNACA1800Saccharomyces cerevisiae
Entity ID: 79
MoleculeChainsLengthOrganism
P-SITE TRNA ASPCB75Saccharomyces cerevisiae
Entity ID: 80
MoleculeChainsLengthOrganism
MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')CC11Saccharomyces cerevisiae
Entity ID: 81
MoleculeChainsLengthOrganism
25S rRNADA3396Saccharomyces cerevisiae
Entity ID: 82
MoleculeChainsLengthOrganism
5.8S rRNADB158Saccharomyces cerevisiae
Entity ID: 83
MoleculeChainsLengthOrganism
5S rRNADC118Saccharomyces cerevisiae
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
Ab, Ac, AG, AW, BL, Bx, By, Bz
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Other
  • Version 1.2: 2015-03-25
    Type: Other