4TVI

X-ray crystal structure of an aminotransferase from Brucella abortus bound to the co-factor PLP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

X-ray crystal structure of an aminotransferase from Brucella abortus bound to the co-factor PLP

Fairman, J.W.Davies, D.R.Lorimer, D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aminotransferase, class IV
A, B
312Brucella abortus (strain 2308)Mutation(s): 0 
Find proteins for Q2YKS6 (Brucella abortus (strain 2308))
Go to UniProtKB:  Q2YKS6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
LLP
Query on LLP
A, B
L-PEPTIDE LINKINGC14 H22 N3 O7 PLYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 93.990α = 90.00
b = 127.320β = 90.00
c = 47.690γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
XDSdata reduction
PDB_EXTRACTdata extraction
PHASERphasing
XSCALEdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States--

Revision History 

  • Version 1.0: 2014-07-30
    Type: Initial release
  • Version 2.0: 2017-09-13
    Type: Author supporting evidence, Database references, Derived calculations, Non-polymer description, Other, Source and taxonomy, Structure summary