Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide
Liu, Y., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Guanine nucleotide exchange factor VAV2 | 117 | Homo sapiens | Mutation(s): 0  Gene Names: VAV2 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P52735 (Homo sapiens) Explore P52735  Go to UniProtKB:  P52735 | |||||
PHAROS:  P52735 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P52735 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thioredoxin-interacting protein | 14 | Homo sapiens | Mutation(s): 2  Gene Names: TXNIP, VDUP1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9H3M7 (Homo sapiens) Explore Q9H3M7  Go to UniProtKB:  Q9H3M7 | |||||
PHAROS:  Q9H3M7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9H3M7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UNX Query on UNX | G [auth A] H [auth A] I [auth A] J [auth A] K [auth B] | UNKNOWN ATOM OR ION X |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
PTR Query on PTR | D, E, F | L-PEPTIDE LINKING | C9 H12 N O6 P | TYR |
Length ( Å ) | Angle ( ˚ ) |
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a = 99.764 | α = 90 |
b = 99.764 | β = 90 |
c = 160.946 | γ = 120 |
Software Name | Purpose |
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Aimless | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |