4ROJ

Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide

Liu, Y.Tempel, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Min, J.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Guanine nucleotide exchange factor VAV2
A, B, C
117Homo sapiensMutation(s): 0 
Gene Names: VAV2
Find proteins for P52735 (Homo sapiens)
Go to Gene View: VAV2
Go to UniProtKB:  P52735
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Thioredoxin-interacting protein
D, E, F
14Homo sapiensMutation(s): 0 
Gene Names: TXNIP (VDUP1)
Find proteins for Q9H3M7 (Homo sapiens)
Go to Gene View: TXNIP
Go to UniProtKB:  Q9H3M7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B, C, F
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
NH2
Query on NH2
D, E, F
NON-POLYMERH2 N

--

PTR
Query on PTR
D, E, F
L-PEPTIDE LINKINGC9 H12 N O6 PTYR
ACE
Query on ACE
D, E, F
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 99.764α = 90.00
b = 99.764β = 90.00
c = 160.946γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
Aimlessdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-10
    Type: Initial release