4ROJ

Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure of the VAV2 SH2 domain in complex with TXNIP phosphorylated peptide

Liu, Y.Tempel, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Min, J.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide exchange factor VAV2A, B, C117Homo sapiensMutation(s): 0 
Gene Names: VAV2
Find proteins for P52735 (Homo sapiens)
Explore P52735 
Go to UniProtKB:  P52735
NIH Common Fund Data Resources
PHAROS  P52735
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Thioredoxin-interacting proteinD, E, F14Homo sapiensMutation(s): 2 
Gene Names: TXNIPVDUP1
Find proteins for Q9H3M7 (Homo sapiens)
Explore Q9H3M7 
Go to UniProtKB:  Q9H3M7
NIH Common Fund Data Resources
PHAROS  Q9H3M7
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download CCD File 
A, B, C, F
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PTR
Query on PTR
D,E,FL-PEPTIDE LINKINGC9 H12 N O6 PTYR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.764α = 90
b = 99.764β = 90
c = 160.946γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-10
    Type: Initial release