4RAU | pdb_00004rau

crystal structure of RTOFab in complex with human PF4

PDB DOI: https://doi.org/10.2210/pdb4RAU/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus musculus, Homo sapiens
Expression System: Mus musculus, Drosophila melanogaster
Mutation(s): No

Deposited: 2014-09-11 Released: 2016-03-16
Deposition Author(s): Cai, Z., Zhu, Z., Liu, Q., Greene, M.I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.74 Å
R-Value Free:
0.284 (Depositor), 0.288 (DCC)
R-Value Work:
0.243 (Depositor), 0.246 (DCC)
R-Value Observed:
0.245 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4RAU

This is version 1.1 of the entry. See complete history.

Literature

crystal structure of RTOFab in complex with platelet factor 4

Cai, Z., Zhu, Z., Liu, Q., Greene, M.I.

To be published.

Macromolecule Content

Total Structure Weight: 438.56 kDa
Atom Count: 30,074
Modeled Residue Count: 3,970
Deposited Residue Count: 4,008
Unique protein chains: 3

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RTOFab light chain	A, D, G, J, M A, D, G, J, M, P, S, V	212	Mus musculus	Mutation(s): 0

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RTOFab heavy chain	B, E, H, K, N B, E, H, K, N, Q, T, W	219	Mus musculus	Mutation(s): 0

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Platelet factor 4	C, F, I, L, O C, F, I, L, O, R, U, X	70	Homo sapiens	Mutation(s): 0 Gene Names: PF4, CXCL4, SCYB4
UniProt & NIH Common Fund Data Resources
Find proteins for P02776 (Homo sapiens) Explore P02776 Go to UniProtKB: P02776
PHAROS: P02776 GTEx: ENSG00000163737
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02776
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.74 Å
R-Value Free: 0.284 (Depositor), 0.288 (DCC)
R-Value Work: 0.243 (Depositor), 0.246 (DCC)
R-Value Observed: 0.245 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 161.424	α = 90
b = 171.873	β = 90
c = 208.159	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-03-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-03-16
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.