4R04

Clostridium difficile Toxin A (TcdA)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Glucosyl Transferase Structure

Lacy, D.B.Spiller, B.W.Rutherford, S.A.

(2016) Nat Microbiol --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Toxin A
A
1838Clostridioides difficileMutation(s): 0 
Gene Names: toxA (tcdA)
EC: 3.4.22.-
Find proteins for P16154 (Clostridioides difficile)
Go to UniProtKB:  P16154
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.221 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 303.490α = 90.00
b = 124.540β = 97.50
c = 75.950γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
SHARPphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-06
    Type: Initial release