Macromolecule Content

Total Structure Weight: 54.35 kDa
Atom Count: 3968
Residue Count: 483
Unique protein chains: 1

4QQA

Crystal structure of pneumolysin from Streptococcus pneumoniae

DOI: 10.2210/pdb4QQA/pdb

Classification: TOXIN
Organism(s): Streptococcus pneumoniae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-27 Released: 2015-08-05
Deposition Author(s): Park, S.A., Lee, K.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.261
R-Value Work: 0.189
R-Value Observed: 0.195

wwPDB Validation 3D Report Full Report

Literature

Crystal structure of pneumolysin from Streptococcus pneumoniae

Park, S.A., Lee, K.S.

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pneumolysin	A	484	Streptococcus pneumoniae	Mutation(s): 0 Gene Names: ply, ply_1, ply_2, A5N45_10690, AZJ70_07035, ERS019367_01469, ERS019561_00815, ERS020408_01837, ERS020598_01549, ERS020671_02219... ply, ply_1, ply_2, A5N45_10690, AZJ70_07035, ERS019367_01469, ERS019561_00815, ERS020408_01837, ERS020598_01549, ERS020671_02219, ERS020862_00910, ERS020948_02011, ERS021280_01495, ERS021431_02102, ERS021752_00284, ERS022516_02016, ERS022641_02042, ERS043879_01616, ERS070137_01903, ERS232442_02072, ERS232443_01967, ERS232469_02053, ERS232512_02053, ERS367973_01254, ERS368006_01071, ERS409277_01463, ERS409331_01389, FE155_05335, GM524_08630, GM528_07735, GM529_08470, GM533_04865, GM546_05935, SAMEA104035127_01334, SAMEA104035134_01268, SAMEA104035155_01976, SAMEA104035333_01302, SAMEA104035342_01590, SAMEA104035370_01404, SAMEA104035469_01870, SAMEA104035600_01738, SAMEA104035670_01922, SAMEA104035805_01983, SAMEA104035911_01653, SAMEA104154639_01672, SAMEA104154666_01383, SAMEA104154673_01622, SAMEA104154682_01611, SAMEA2050264_02012, SAMEA2050326_00676, SAMEA2051750_01415, SAMEA2066126_02169, SAMEA2147814_00716, SAMEA2203858_01062, SAMEA2203862_01265, SAMEA2204024_01495, SAMEA2335963_00459, SAMEA2521606_02038, SAMEA2521861_01215, SAMEA2627268_02242, SAMEA2658279_02001, SAMEA2796717_02225, SAMEA2796719_00655, SAMEA2814217_01999, SAMEA3171064_02046, SAMEA3173021_01638, SAMEA3207004_00444, SAMEA3207192_01186, SAMEA3207200_01581, SAMEA3232645_00358, SAMEA3309693_01285, SAMEA3309804_01964, SAMEA3353191_01434, SAMEA3353204_02011, SAMEA3353590_02054, SAMEA3354015_01742, SAMEA3354309_01886, SAMEA3354337_01699, SAMEA3389186_01730, SAMEA3389245_00793, SAMEA3431359_00925, SAMEA3447943_01667, SAMEA3714180_01803, SAMEA3714202_00979, SAMEA3714340_01759, SAMEA3714392_02122, SAMEA4387970_02142, SAMEA4388060_01816, SAMEA4388190_01228, SAMEA4388349_01829, SAMEA4707892_01561
Find proteins for Q2XU26 (Streptococcus pneumoniae) Explore Q2XU26 Go to UniProtKB: Q2XU26
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.261
R-Value Work: 0.189
R-Value Observed: 0.195
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.722	α = 90
b = 159.931	β = 90
c = 209.358	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2014-06-27
Released Date: 2015-08-05

Deposition Author(s):

Revision History

Version 1.0: 2015-08-05
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.