4QG5 | pdb_00004qg5

Crystal structure of phosphoglucomutase from Leishmania major at 3.5 angstrom resolution

• PDB DOI: https://doi.org/10.2210/pdb4QG5/pdb

• Classification: ISOMERASE
• Organism(s): Leishmania major
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-05-22 Released: 2015-05-27 
• Deposition Author(s): Waugh, B., Sen, U., Banerjee, R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free: 
  0.315 (Depositor), 0.320 (DCC) 
• R-Value Work: 
  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.242 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of phosphoglucomutase from Leishmania major at 3.5 angstrom resolution

Waugh, B., Sen, U., Banerjee, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 257.08 kDa 
• Atom Count: 17,136 
• Modeled Residue Count: 2,244 
• Deposited Residue Count: 2,368 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative phosphoglucomutase	A, B, C, D	592	Leishmania major	Mutation(s): 0  Gene Names: LMJF_21_0640 EC: 5.4.2.2
UniProt
Find proteins for Q4QCF1 (Leishmania major) Explore Q4QCF1  Go to UniProtKB:  Q4QCF1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	E [auth A], F [auth B], G [auth C], H [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.50 Å
• R-Value Free:  0.315 (Depositor), 0.320 (DCC) 
• R-Value Work:  0.238 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.242 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 202.358	α = 90
b = 114.971	β = 110.03
c = 125.915	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-05-27 
Deposition Author(s): Waugh, B., Sen, U., Banerjee, R.

Revision History  

• Version 1.0: 2015-05-27
  Type: Initial release
  
• Version 1.1: 2016-04-20
  Changes: Experimental preparation
• Version 1.2: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description