4QG5 | pdb_00004qg5

Crystal structure of phosphoglucomutase from Leishmania major at 3.5 angstrom resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	RPE65	e4qg5D1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
C	RPE65	e4qg5C1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
B	RPE65	e4qg5B1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)
A	RPE65	e4qg5A1	A: a/b three-layered sandwiches	X: OB-fold	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: RPE65	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 3	CATH (4.3.0)
D	3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	CATH (4.3.0)
C	3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 3	CATH (4.3.0)
C	3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	CATH (4.3.0)
B	3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 3	CATH (4.3.0)
B	3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	CATH (4.3.0)
A	3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 3	CATH (4.3.0)
A	3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PGM_PMM_II)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II		Domain
A, B, C, D	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III (PGM_PMM_III)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III		Domain
A, B, C, D	PF24947	Phosphoglucomutase-1, C-terminal domain (PGM1_C_vert_fung)	Phosphoglucomutase-1, C-terminal domain	This entry represents the C-terminal domain of phosphoglucomutase-1 (PGM1) from human, and its homologues from vertebrates and fungi, which catalyses the bi-directional interconversion between alpha-D-glucose 1-phosphate (G1P) and alpha-D-glucose 6-p ...	This entry represents the C-terminal domain of phosphoglucomutase-1 (PGM1) from human, and its homologues from vertebrates and fungi, which catalyses the bi-directional interconversion between alpha-D-glucose 1-phosphate (G1P) and alpha-D-glucose 6-phosphate (G6P), a reaction that is essential for normal carbohydrate metabolism and is also important in the cytoplasmic biosynthesis of nucleotide sugars needed for glycan biosynthesis [2-5]. This domain contains a six-stranded antiparallel beta-sheet with two alpha-helices lying on the face of the sheet opposite the active site which is located centrally, in a deep cleft between the four domains of these proteins [1-5]. This domain contains the phosphate-binding loop which interacts with the substrate phosphate moiety [5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative phosphoglucomutase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding isomerase activity intramolecular phosphotransferase activity catalytic activity intramolecular transferase activity phosphoglucomutase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR045244	Phosphoglucomutase	Family
A, B, C, D	IPR005846	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Domain
A, B, C, D	IPR005845	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Domain
A, B, C, D	IPR016055	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Homologous Superfamily
A, B, C, D	IPR016066	Alpha-D-phosphohexomutase, conserved site	Conserved Site
A, B, C, D	IPR005844	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Domain
A, B, C, D	IPR005841	Alpha-D-phosphohexomutase superfamily	Family
A, B, C, D	IPR036900	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.