4PWT

Crystal structure of peptidoglycan-associated outer membrane lipoprotein from Yersinia pestis CO92


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of peptidoglycan-associated outer membrane lipoprotein from Yersinia pestis CO92

Maltseva, N.Kim, Y.Osipiuk, J.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidoglycan-associated lipoprotein
A, B, C
131Yersinia pestisMutation(s): 0 
Gene Names: pal (excC)
Find proteins for A0A384KAK0 (Yersinia pestis)
Go to UniProtKB:  A0A384KAK0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
POP
Query on POP

Download SDF File 
Download CCD File 
C
PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMT
Query on FMT

Download SDF File 
Download CCD File 
C
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.752 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.168 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 65.015α = 90.00
b = 65.015β = 90.00
c = 86.967γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data collection
ARP/wARPmodel building
SBC-Collectdata collection
HKL-3000phasing
MOLREPphasing
HKL-3000data reduction
HKL-3000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-09
    Type: Initial release