4PWT | pdb_00004pwt

Crystal structure of peptidoglycan-associated outer membrane lipoprotein from Yersinia pestis CO92

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4pwta_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	OmpA-like	automated matches	(Yersinia pestis CO92 ) [TaxId: 214092 ],	SCOPe (2.08)
C	d4pwtc_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	OmpA-like	automated matches	(Yersinia pestis CO92 ) [TaxId: 214092 ],	SCOPe (2.08)
B	d4pwtb_	Alpha and beta proteins (a+b)	Bacillus chorismate mutase-like	OmpA-like	OmpA-like	automated matches	(Yersinia pestis CO92 ) [TaxId: 214092 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_L35p	e4pwtA1	A: alpha bundles	X: DEATH domain	H: HTH	T: winged helix domain	F: Ribosomal_L35p	ECOD (develop294)
C	Ribosomal_L35p	e4pwtC1	A: alpha bundles	X: DEATH domain	H: HTH	T: winged helix domain	F: Ribosomal_L35p	ECOD (develop294)
B	Ribosomal_L35p	e4pwtB1	A: alpha bundles	X: DEATH domain	H: HTH	T: winged helix domain	F: Ribosomal_L35p	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
C	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)
B	3.30.1330.60	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00691	OmpA family (OmpA)	OmpA family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Peptidoglycan-associated lipoprotein	-	cellular process cell division	cell periphery cell outer membrane cellular anatomical structure external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR006664	Outer membrane protein, bacterial	Domain
A, B, C	IPR006665	OmpA-like domain	Domain
A, B, C	IPR039001	Peptidoglycan-associated lipoprotein	Family
A, B, C	IPR006690	Outer membrane protein, OmpA-like, conserved site	Conserved Site
A, B, C	IPR014169	Peptidoglycan-associated lipoprotein, C-terminal	Domain
A, B, C	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
A, B, C	IPR036737	OmpA-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.