4PIW

Crystal structure of sugar aminotransferase WecE from Escherichia coli K-12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Crystal structure of sugar aminotransferase WecE from Escherichia coli K-12

Wang, F.Xu, W.Helmich, K.E.Singh, S.Yennamalli, R.M.Bingman, C.A.Miller, M.D.Thorson, J.S.Phillips Jr., G.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TDP-4-keto-6-deoxy-D-glucose transaminase family protein
A, B, C, D, E, F, G, H
396Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: wecE (rffA, yifI)
EC: 2.6.1.59
Find proteins for P27833 (Escherichia coli (strain K12))
Go to UniProtKB:  P27833
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
LLP
Query on LLP
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC14 H22 N3 O7 PLYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 125.341α = 90.00
b = 87.483β = 91.10
c = 161.554γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
XSCALEdata scaling
XDSdata reduction
PHENIXphasing
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesU01GM098248

Revision History 

  • Version 1.0: 2014-07-16
    Type: Initial release
  • Version 1.1: 2015-10-14
    Type: Data collection
  • Version 2.0: 2017-09-27
    Type: Author supporting evidence, Derived calculations, Non-polymer description, Refinement description, Structure summary