4NIE

Crystal structure of the orphan nuclear receptor ROR(gamma)t ligand-binding domain in complex with small molecule ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of Tertiary Amine and Indole Derivatives as Potent ROR-gamma-t Inverse Agonists

Yang, T.Qian, L.Cheng, Y.B.Cai, W.Ma, Y.L.Yang, L.Q.Wu, Q.Q.Orband-Miller, L.A.Zhou, L.Huxdorf, M.Zhang, W.Zhang, J.Xiang, J.N.Leung, S.Qiu, Y.Zhong, Z.Elliot, J.D.Lin, X.C.Wang, Y.H.

(2013) ACS MED.CHEM.LETT. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A, B
262Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Peptide from Nuclear receptor coactivator 2
C, D
12Homo sapiensMutation(s): 0 
Gene Names: NCOA2 (BHLHE75, SRC2, TIF2)
Find proteins for Q15596 (Homo sapiens)
Go to Gene View: NCOA2
Go to UniProtKB:  Q15596
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DMX
Query on DMX

Download SDF File 
Download CCD File 
A, B
3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE
C12 H19 N O3 S
MEJASPJNLSQOAG-UHFFFAOYSA-N
 Ligand Interaction
NBH
Query on NBH

Download SDF File 
Download CCD File 
A, B
N-(4-{[benzyl(propyl)amino]methyl}phenyl)-2-[4-(ethylsulfonyl)phenyl]acetamide
C27 H32 N2 O3 S
PWRYHBNVYOIZJC-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
NBHIC50: >25000 nM (99) BINDINGDB
NBHEC50: 20 nM (99) BINDINGDB
NBHIC50: 20 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 67.085α = 90.00
b = 86.349β = 90.00
c = 91.980γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
HKL-2000data collection
HKL-2000data reduction
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-11-06 
  • Released Date: 2013-12-11 
  • Deposition Author(s): Ma, Y.L., Yang, L.Q.

Revision History 

  • Version 1.0: 2013-12-11
    Type: Initial release
  • Version 1.1: 2017-10-04
    Type: Data collection