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Crystal structure of the orphan nuclear receptor ROR(gamma)t ligand-binding domain in complex with small molecule ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2M Ammonium Sulfate, 0.1M Bis-Tris, pH 6.5, 14% (w/v) PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.085 α = 90 b = 86.349 β = 90 c = 91.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD Bruker AXIOM 200 2010-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E DW 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 91.98 99.9 36351 36335 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.12 99.7 0.49 4.2 6.9 35890
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 25 2 36371 34458 1812 99.72 0.20946 0.20751 0.2123 0.24677 0.2518 RANDOM 30.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 -1.69 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.555 r_dihedral_angle_4_deg 19.07 r_dihedral_angle_3_deg 11.715 r_long_range_B_refined 6.028 r_long_range_B_other 6.027 r_dihedral_angle_1_deg 4.322 r_angle_other_deg 1.139 r_angle_refined_deg 0.996 r_scangle_other 0.646 r_scbond_it 0.411
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.555 r_dihedral_angle_4_deg 19.07 r_dihedral_angle_3_deg 11.715 r_long_range_B_refined 6.028 r_long_range_B_other 6.027 r_dihedral_angle_1_deg 4.322 r_angle_other_deg 1.139 r_angle_refined_deg 0.996 r_scangle_other 0.646 r_scbond_it 0.411 r_scbond_other 0.411 r_mcangle_it 0.384 r_mcangle_other 0.384 r_mcbond_it 0.22 r_mcbond_other 0.22 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4095 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 98
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling