4ND9

The putative substrate binding domain of ABC-type transporter from Agrobacterium tumefaciens in open conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The putative substrate binding domain of ABC-type transporter from Agrobacterium tumefaciens in open conformation

Nicholls, R.Tkaczuk, K.L.Kagan, O.Chruszcz, M.Domagalski, M.J.Savchenko, A.Joachimiak, A.Murshudov, G.Minor, W.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, substrate binding protein (Proline/glycine/betaine)286Agrobacterium fabrum str. C58Mutation(s): 0 
Gene Names: Atu0199
UniProt
Find proteins for A9CKK7 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Explore A9CKK7 
Go to UniProtKB:  A9CKK7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA9CKK7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.702α = 90
b = 64.155β = 90
c = 101.123γ = 90
Software Package:
Software NamePurpose
HKL-3000data collection
SHELXSphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-11
    Type: Initial release
  • Version 1.1: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.2: 2024-11-20
    Changes: Data collection, Structure summary