4N18

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase family protein from Klebsiella pneumoniae 342


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase family protein from Klebsiella pneumoniae 342

Bacal, P.Shabalin, I.G.Cooper, D.R.Majorek, K.A.Osinski, T.Hillerich, B.S.Hammonds, J.Nawar, A.Stead, M.Chowdhury, S.Gizzi, A.Bonanno, J.Seidel, R.Almo, S.C.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-isomer specific 2-hydroxyacid dehydrogenase family protein
A
332Klebsiella pneumoniae (strain 342)Mutation(s): 0 
Find proteins for B5XVG7 (Klebsiella pneumoniae (strain 342))
Go to UniProtKB:  B5XVG7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PE4
Query on PE4

Download SDF File 
Download CCD File 
A
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
 Ligand Interaction
CIT
Query on CIT

Download SDF File 
Download CCD File 
A
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 76.567α = 90.00
b = 76.567β = 90.00
c = 101.281γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SOLVEphasing
RESOLVEphasing
HKL-3000data collection
HKL-3000data reduction
MLPHAREphasing
SCALEPACKdata scaling
HKL-3000data scaling
HKL-3000phasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2013-10-16
    Type: Initial release