4MXQ

42F3 TCR pCPC5/H-2Ld Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.596 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.

Adams, J.J.Narayanan, S.Birnbaum, M.E.Sidhu, S.S.Blevins, S.J.Gee, M.H.Sibener, L.V.Baker, B.M.Kranz, D.M.Garcia, K.C.

(2016) Nat. Immunol. 17: 87-94


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
42F3 alpha VmVh chimera
C
212Mus musculusHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: Traj58, TRAC (TCRA)
Find proteins for P01738 (Mus musculus)
Go to UniProtKB:  P01738
Find proteins for A0A0G2JFA3 (Mus musculus)
Go to UniProtKB:  A0A0G2JFA3
Find proteins for P01848 (Homo sapiens)
Go to UniProtKB:  P01848
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
42F3 beta VmVh chimera
D
243Homo sapiensMus musculus
This entity is chimeric
Mutation(s): 0 
Gene Names: TRBC2 (TCRBC2), Trbv13-1, Trbj2-2
Find proteins for A0A5B9 (Homo sapiens)
Go to UniProtKB:  A0A5B9
Find proteins for A0A075B5I3 (Mus musculus)
Go to UniProtKB:  A0A075B5I3
Find proteins for A0A0A6YX08 (Mus musculus)
Go to UniProtKB:  A0A0A6YX08
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
H-2 class I histocompatibility antigen, L-D alpha chain
A
180Mus musculusMutation(s): 7 
Gene Names: H2-L
Find proteins for P01897 (Mus musculus)
Go to UniProtKB:  P01897
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
pCPC5
B
9N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.596 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.211 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 102.719α = 90.00
b = 102.719β = 90.00
c = 322.944γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
MOSFLMdata reduction
PHENIXrefinement
PHASERphasing
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-19
    Type: Initial release
  • Version 1.1: 2018-09-26
    Type: Data collection, Database references