4MQD

Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis

Chang, C.Mack, J.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA-entry nuclease inhibitor
A, B, C, D
135Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: nin (comJ)
Find proteins for P12669 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12669
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.178 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 125.826α = 90.00
b = 125.826β = 90.00
c = 37.013γ = 120.00
Software Package:
Software NamePurpose
MLPHAREphasing
HKL-3000phasing
SHELXDEphasing
HKL-3000data scaling
REFMACrefinement
SBC-Collectdata collection
RESOLVEphasing
DMphasing
ARP/wARPmodel building
HKL-3000data reduction
PDB_EXTRACTdata extraction
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-09
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description