4MJ9

lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.096 
  • R-Value Work: 0.086 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The Structural Effect of Methyl Substitution on the Binding of Polypyridyl Ru dppz Complexes to DNA

Hall, J.P.Beer, H.Buchner, K.Cardin, D.J.Cardin, C.J.

(2015) Organometallics --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')A10N/A
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
BA
Query on BA

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A
BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
 Ligand Interaction
2J0
Query on 2J0

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A
(10-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)
C39 H24 N12 Ru
SUPGJTRQQWHNCH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.97 Å
  • R-Value Free: 0.096 
  • R-Value Work: 0.086 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 42.270α = 90.00
b = 42.270β = 90.00
c = 39.670γ = 90.00
Software Package:
Software NamePurpose
GDAdata collection
REFMACrefinement
Aimlessdata scaling
SHELXCDphasing
XDSdata reduction
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-09-24
    Type: Initial release
  • Version 1.1: 2015-02-18
    Type: Database references
  • Version 1.2: 2015-05-13
    Type: Database references
  • Version 1.3: 2017-11-15
    Type: Refinement description