☰ Navigation Tabs
lambda-[Ru(TAP)2(dppz-10-Me)]2+ bound to a synthetic DNA oligomer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.3 291 1ul 1mM d(TCGGCGCCGA)2, 1ul 4mM rac-Ru(TAP)2(dppz-10-Me)]2+, 6ul 40mM Na cacodylate pH 6.3, 12mM spermine-tetra HCl, 20mM BaCl2, 80mM KCl, 10% 2-methyl-2,4-pentanediol equilibriated against 1ml 35% 2-methyl-2,4-pentanediol , VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.91 57.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.27 α = 90 b = 42.27 β = 90 c = 39.67 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.8856 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.97 21.14 95.9 20804 20804 2.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.97 1 98.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.97 21.14 19713 1069 94.98 0.0865 0.08601 0.0867 0.09564 0.0953 RANDOM 17.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.28
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.644 r_sphericity_bonded 13.429 r_long_range_B_refined 4.446 r_long_range_B_other 2.933 r_angle_refined_deg 2.549 r_rigid_bond_restr 2.265 r_scangle_other 1.722 r_angle_other_deg 1.428 r_scbond_it 1.273 r_scbond_other 1.271
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.644 r_sphericity_bonded 13.429 r_long_range_B_refined 4.446 r_long_range_B_other 2.933 r_angle_refined_deg 2.549 r_rigid_bond_restr 2.265 r_scangle_other 1.722 r_angle_other_deg 1.428 r_scbond_it 1.273 r_scbond_other 1.271 r_chiral_restr 0.06 r_bond_refined_d 0.032 r_gen_planes_refined 0.031 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 202 Solvent Atoms 116 Heterogen Atoms 54
Software Software Software Name Purpose GDA data collection SHELXCD phasing SHELXE model building REFMAC refinement XDS data reduction Aimless data scaling