4M60

Crystal structure of macrolide glycosyltransferases OleD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of macrolide glycosyltransferases OleD

Olmos Jr., J.L.Martinez iii, E.Wang, F.Helmich, K.E.Singh, S.Xu, W.Bingman, C.A.Thorson, J.S.Phillips Jr., G.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Oleandomycin glycosyltransferase
A
418Streptomyces antibioticusMutation(s): 0 
Gene Names: oleD (UGT102A2)
EC: 2.4.1.-
Find proteins for Q53685 (Streptomyces antibioticus)
Go to UniProtKB:  Q53685
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download SDF File 
Download CCD File 
A
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.183 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 124.134α = 90.00
b = 124.134β = 90.00
c = 67.636γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
HKL-2000data collection
PHENIXphasing
SCALEPACKdata scaling
DENZOdata reduction
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-04
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description