4LQW

Crystal structure of HIV-1 capsid N-terminal domain in complex with NUP358 cyclophilin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

HIV-1 capsid undergoes coupled binding and isomerization by the nuclear pore protein NUP358.

Bichel, K.Price, A.J.Schaller, T.Towers, G.J.Freund, S.M.James, L.C.

(2013) Retrovirology 10: 81-81

  • DOI: 10.1186/1742-4690-10-81

  • PubMed Abstract: 
  • Lentiviruses such as HIV-1 can be distinguished from other retroviruses by the cyclophilin A-binding loop in their capsid and their ability to infect non-dividing cells. Infection of non-dividing cells requires transport through the nuclear pore but ...

    Lentiviruses such as HIV-1 can be distinguished from other retroviruses by the cyclophilin A-binding loop in their capsid and their ability to infect non-dividing cells. Infection of non-dividing cells requires transport through the nuclear pore but how this is mediated is unknown.


    Organizational Affiliation

    Protein and Nucleic Acid Chemistry Division, Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
E3 SUMO-protein ligase RanBP2
A, B
177Homo sapiensMutation(s): 0 
Gene Names: RANBP2 (NUP358)
EC: 2.3.2.-
Find proteins for P49792 (Homo sapiens)
Go to Gene View: RANBP2
Go to UniProtKB:  P49792
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Capsid protein p24
C, D
146Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: gag-pol
Find proteins for P12497 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P12497
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.205 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 142.180α = 90.00
b = 38.260β = 100.64
c = 123.810γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-14
    Type: Initial release
  • Version 1.1: 2015-02-04
    Type: Structure summary