4LNZ

Crystal structure of human Myosin 5b globular domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.312 
  • R-Value Work: 0.253 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insights into the globular tails of the human type v myosins myo5a, myo5b, and myo5c.

Velvarska, H.Niessing, D.

(2013) Plos One 8: e82065-e82065

  • DOI: 10.1371/journal.pone.0082065
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Vertebrate type V myosins (MyoV) Myo5a, Myo5b, and Myo5c mediate transport of several different cargoes. All MyoV paralogs bind to cargo complexes mainly by their C-terminal globular domains. In absence of cargo, the globular domain of Myo5a inhibits ...

    Vertebrate type V myosins (MyoV) Myo5a, Myo5b, and Myo5c mediate transport of several different cargoes. All MyoV paralogs bind to cargo complexes mainly by their C-terminal globular domains. In absence of cargo, the globular domain of Myo5a inhibits its motor domain. Here, we report low-resolution SAXS models for the globular domains from human Myo5a, Myo5b, and Myo5c, which suggest very similar overall shapes of all three paralogs. We determined the crystal structures of globular domains from Myo5a and Myo5b, and provide a homology model for human Myo5c. When we docked the Myo5a crystal structure into a previously published electron microscopy density of the autoinhibited full-length Myo5a, only one domain orientation resulted in a good fit. This structural arrangement suggests the participation of additional region of the globular domain in autoinhibition. Quantification of the interaction of the Myo5a globular domain with its motor complex revealed a tight binding with dissociation half-life in the order of minutes, suggesting a rather slow transition between the active and inactive states.


    Organizational Affiliation

    Institute of Structural Biology; Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany ; Gene Center and Department of Biochemistry, Ludwig-Maximilians-University, München, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Unconventional myosin-Vb
A
394Homo sapiensMutation(s): 0 
Gene Names: MYO5B (KIAA1119)
Find proteins for Q9ULV0 (Homo sapiens)
Go to Gene View: MYO5B
Go to UniProtKB:  Q9ULV0
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.11 Å
  • R-Value Free: 0.312 
  • R-Value Work: 0.253 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 60.644α = 90.00
b = 78.442β = 90.00
c = 86.606γ = 90.00
Software Package:
Software NamePurpose
SHARPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
SCALAdata scaling
ADSCdata collection
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-25
    Type: Initial release
  • Version 1.1: 2014-01-15
    Type: Database references