4LB0

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline

Vetting, M.W.Toro, R.Bhosle, R.Al Obaidi, N.F.Morisco, L.L.Wasserman, S.R.Sojitra, S.Stead, M.Washington, E.Glenn, A.S.Chowdhury, S.Evans, B.Hammonds, J.Hillerich, B.Love, J.Seidel, R.D.Imker, H.J.Gerlt, J.A.Almo, S.C.Enzyme Function Initiative (EFI)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein
A, B
348Agrobacterium vitis (strain S4 / ATCC BAA-846)EC: 5.1.1.8
Find proteins for B9JQV3 (Agrobacterium vitis (strain S4 / ATCC BAA-846))
Go to UniProtKB:  B9JQV3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
HYP
Query on HYP

Download SDF File 
Download CCD File 
B
4-HYDROXYPROLINE
HYDROXYPROLINE
C5 H9 N O3
PMMYEEVYMWASQN-DMTCNVIQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.158 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 178.014α = 90.00
b = 178.014β = 90.00
c = 49.735γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
SCALAdata scaling
MOSFLMdata reduction
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2013-07-17
    Type: Initial release