4KQD

The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ

Lu, J.Glover, J.N.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein TraJ
A, B, C, D
121Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: traJ
Find proteins for P06626 (Escherichia coli (strain K12))
Go to UniProtKB:  P06626
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
C
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
DTT
Query on DTT

Download SDF File 
Download CCD File 
A
2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
 Ligand Interaction
DTD
Query on DTD

Download SDF File 
Download CCD File 
B, D
DITHIANE DIOL
C4 H8 O2 S2
YPGMOWHXEQDBBV-IMJSIDKUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.160 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 95.228α = 90.00
b = 95.228β = 90.00
c = 102.041γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
SOLVEphasing
HKL-2000data collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-05-14 
  • Released Date: 2014-07-02 
  • Deposition Author(s): Lu, J., Glover, J.N.M.

Revision History 

  • Version 1.0: 2014-07-02
    Type: Initial release