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The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277.15 2M Ammonium sulphate, 0.1 M sodium citrate, 5% glycerol, 5 mM DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.32 47.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.228 α = 90 b = 95.228 β = 90 c = 102.041 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 12.3.1 1.11584, 0.979566, 0.953697, 0.979685 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 82.47 99.8 0.058 0.051 10.5 75906 75754 243.5 8.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 97.2 0.708 0.609 2.3 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 47.66 71829 3797 99.71 0.16116 0.16027 0.1707 0.17799 0.185 RANDOM 27.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.14 0.14 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.907 r_sphericity_free 27.46 r_dihedral_angle_4_deg 15.427 r_dihedral_angle_3_deg 14.368 r_sphericity_bonded 6.919 r_dihedral_angle_1_deg 6.411 r_rigid_bond_restr 2.357 r_mcangle_it 1.822 r_scbond_it 1.821 r_mcbond_it 1.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.907 r_sphericity_free 27.46 r_dihedral_angle_4_deg 15.427 r_dihedral_angle_3_deg 14.368 r_sphericity_bonded 6.919 r_dihedral_angle_1_deg 6.411 r_rigid_bond_restr 2.357 r_mcangle_it 1.822 r_scbond_it 1.821 r_mcbond_it 1.447 r_mcbond_other 1.447 r_angle_refined_deg 1.269 r_angle_other_deg 0.757 r_chiral_restr 0.085 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3810 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 30
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling