Macromolecule Content

Total Structure Weight: 98.34 kDa
Atom Count: 6,703
Modelled Residue Count: 805
Deposited Residue Count: 885
Unique protein chains: 1

4K29

Crystal structure of an enoyl-CoA hydratase/isomerase from Xanthobacter autotrophicus Py2

PDB DOI: 10.2210/pdb4K29/pdb

Classification: ISOMERASE
Organism(s): Xanthobacter autotrophicus Py2
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-04-08 Released: 2013-04-24
Deposition Author(s): Eswaramoorthy, S., Chamala, S., Evans, B., Foti, F., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Al Obaidi, N., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.198
R-Value Work: 0.181
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of an enoyl-CoA hydratase/isomerase from Xanthobacter autotrophicus Py2

Eswaramoorthy, S., Almo, S.C., Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/isomerase	A, B, C	295	Xanthobacter autotrophicus Py2	Mutation(s): 0 Gene Names: Xaut_3350
UniProt
Find proteins for A7IKN6 (Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)) Explore A7IKN6 Go to UniProtKB: A7IKN6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A7IKN6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TLA Query on TLA Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain F [auth C] SDF format, chain G [auth C] MOL2 format, chain D [auth A] MOL2 format, chain F [auth C] MOL2 format, chain G [auth C]	D [auth A], F [auth C], G [auth C]	L(+)-TARTARIC ACID C₄ H₆ O₆ FEWJPZIEWOKRBE-JCYAYHJZSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain H [auth C] MOL2 format, chain E [auth A] MOL2 format, chain H [auth C]	E [auth A], H [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.198
R-Value Work: 0.181
R-Value Observed: 0.182
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.052	α = 90
b = 144.576	β = 90
c = 129.568	γ = 90

Software Package:

Software Name	Purpose
CBASS	data collection
SHELXS	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-04-24

Deposition Author(s):

Eswaramoorthy, S.

Swaminathan, S.

New York Structural Genomics Research Consortium (NYSGRC)

Revision History (Full details and data files)

Version 1.0: 2013-04-24
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.