4JTR

AKR1C2 complex with ibuprofen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.139 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of NSAID selectivity for the AKR1C family

Yosaatmadja, Y.Flanagan, J.U.Squire, C.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aldo-keto reductase family 1 member C2
A, B
331Homo sapiensMutation(s): 0 
Gene Names: AKR1C2 (DDH2)
EC: 1.-.-.-
Find proteins for P52895 (Homo sapiens)
Go to Gene View: AKR1C2
Go to UniProtKB:  P52895
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NAP
Query on NAP

Download SDF File 
Download CCD File 
A, B
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
IBP
Query on IBP

Download SDF File 
Download CCD File 
A
IBUPROFEN
2-(4-ISOBUTYLPHENYL)PROPIONIC ACID
C13 H18 O2
HEFNNWSXXWATRW-JTQLQIEISA-N
 Ligand Interaction
TLA
Query on TLA

Download SDF File 
Download CCD File 
B
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
IZP
Query on IZP

Download SDF File 
Download CCD File 
B
(2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid
(R)-Ibuprofen
C13 H18 O2
HEFNNWSXXWATRW-SNVBAGLBSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
IBPIC50: 32700 - >100000 nM (86) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.139 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 145.051α = 90.00
b = 145.051β = 90.00
c = 202.474γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-02
    Type: Initial release