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Download EndnoteCrystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4IB2
Crystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution
- DOI: 10.2210/pdb4IB2/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): [Ruminococcus] gnavus ATCC 29149
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-12-07 Released: 2013-01-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.184
- R-Value Work: 0.162
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative Lipoprotein | A, B | 252 | [Ruminococcus] gnavus ATCC 29149 | Mutation(s): 0 Gene Names: ZP_02040096.1, RUMGNA_00858 |
Find proteins for A7AZY4 (Ruminococcus gnavus (strain ATCC 29149 / VPI C7-9)) Go to UniProtKB: A7AZY4 | ||||
Protein Feature View | ||||
| ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MET Query on MET | A, B | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.184
- R-Value Work: 0.162
- R-Value Observed: 0.163
- Space Group: P 1
- Diffraction Data DOI: 10.18430/M34IB2 Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.099 | α = 99.81 |
| b = 52.454 | β = 87.5 |
| c = 54.908 | γ = 94.96 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
| XSCALE | data scaling |
| BUSTER-TNT | refinement |
| XDS | data reduction |
| BUSTER | refinement |
Entry History
Deposition Data
- Deposited Date: 2012-12-07
- Released Date: 2013-01-16 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
