4HPS

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004 in space group P21


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004 in space group P21

Ghosh, A.Ahmed, A.Banu, R.Bhoshle, R.Bonanno, J.Chamala, S.Chowdhury, S.Fiser, A.Glenn, A.S.Hillerich, B.Khafizov, K.Lafleur, J.Love, J.D.Seidel, R.Stead, M.Toro, R.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pyrrolidone-carboxylate peptidase
A, B, C, D
228Xenorhabdus bovienii (strain SS-2004)Gene Names: pcp
EC: 3.4.19.3
Find proteins for D3V0W1 (Xenorhabdus bovienii (strain SS-2004))
Go to UniProtKB:  D3V0W1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.173 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 77.060α = 90.00
b = 73.340β = 111.96
c = 80.540γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
CBASSdata collection
PDB_EXTRACTdata extraction
PHASERphasing
HKL-3000data reduction
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-11-14
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Database references, Refinement description