4HPS

Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004 in space group P21

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4hpsa1	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
A	d4hpsa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
B	d4hpsb1	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
B	d4hpsb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
C	d4hpsc_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)
D	d4hpsd_	Alpha and beta proteins (a/b)	Phosphorylase/hydrolase-like	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	automated matches	automated matches	(Xenorhabdus bovienii SS-2004 ) [TaxId: 406818 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061832	4000580	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	8061833	3000655	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_C15	e4hpsA1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (From Topology)	T: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	F: Peptidase_C15	ECOD (1.6)
B	Peptidase_C15	e4hpsB1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (From Topology)	T: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	F: Peptidase_C15	ECOD (1.6)
C	Peptidase_C15	e4hpsC1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (From Topology)	T: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	F: Peptidase_C15	ECOD (1.6)
D	Peptidase_C15	e4hpsD1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (From Topology)	T: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)	F: Peptidase_C15	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
B	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
C	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)
D	3.40.630.20	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase	Peptidase C15, pyroglutamyl peptidase I-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01470	Pyroglutamyl peptidase (Peptidase_C15)	Pyroglutamyl peptidase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Pyrrolidone-carboxylate peptidase	cysteine-type peptidase activity peptidase activity pyroglutamyl-peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR033694	Pyroglutamyl peptidase I, Cys active site	Active Site
A, B, C, D	IPR029762	Pyroglutamyl peptidase I, bacterial-type	Family
A, B, C, D	IPR036440	Peptidase C15, pyroglutamyl peptidase I-like superfamily	Homologous Superfamily
A, B, C, D	IPR000816	Peptidase C15, pyroglutamyl peptidase I	Family
A, B, C, D	IPR033693	Pyroglutamyl peptidase I, Glu active site	Active Site
A, B, C, D	IPR016125	Peptidase C15, pyroglutamyl peptidase I-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.