4HM7

Naphthalene 1,2-Dioxygenase bound to styrene


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.157 
  • R-Value Observed: 0.159 

wwPDB Validation   3D Report Full Report



Literature

Naphthalene 1,2-Dioxygenase bound to styrene

Ferraro, D.J.Ramaswamy, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Naphthalene 1,2-dioxygenase subunit alpha A449Pseudomonas sp. C18Mutation(s): 0 
Gene Names: doxBNC_004999.1
EC: 1.14.12.12
Find proteins for P0A111 (Pseudomonas sp. (strain C18))
Explore P0A111 
Go to UniProtKB:  P0A111
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Naphthalene 1,2-dioxygenase subunit beta B194Pseudomonas sp. C18Mutation(s): 0 
Gene Names: doxDNC_004999.1
EC: 1.14.12.12
Find proteins for P0A113 (Pseudomonas sp. (strain C18))
Explore P0A113 
Go to UniProtKB:  P0A113
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FES
Query on FES

Download Ideal Coordinates CCD File 
A
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
SYN
Query on SYN

Download Ideal Coordinates CCD File 
A
ethenylbenzene
C8 H8
PPBRXRYQALVLMV-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

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A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
A, B
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download Ideal Coordinates CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.157 
  • R-Value Observed: 0.159 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 139.835α = 90
b = 139.835β = 90
c = 208.029γ = 120
Software Package:
Software NamePurpose
d*TREKdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
d*TREKdata scaling
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-30
    Type: Initial release