4HA4

Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.130 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.

Trofimov, A.A.Polyakov, K.M.Tikhonov, A.V.Bezsudnova, E.Y.Dorovatovskii, P.V.Gumerov, V.M.Ravin, N.V.Skryabin, K.G.Popov, V.O.

(--) Dokl.Biochem.Biophys. 449: 99-101


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-galactosidase
A
489Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15)EC: 3.2.1.23
Find proteins for D9PZ08 (Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15))
Go to UniProtKB:  D9PZ08
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

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A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SIN
Query on SIN

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Download CCD File 
A
SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PG4
Query on PG4

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A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
PG6
Query on PG6

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A
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.130 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.120α = 90.00
b = 84.120β = 90.00
c = 166.270γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
AUTOMARdata collection
BALBESphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-10
    Type: Initial release
  • Version 1.1: 2013-09-04
    Type: Database references