4HA3

Structure of beta-glycosidase from Acidilobus saccharovorans in complex with Tris


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.143 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of beta-glycosidase from Acidilobus saccharovorans in complexes with tris and glycerol.

Trofimov, A.A.Polyakov, K.M.Tikhonov, A.V.Bezsudnova, E.Y.Dorovatovskii, P.V.Gumerov, V.M.Ravin, N.V.Skryabin, K.G.Popov, V.O.

(--) Dokl.Biochem.Biophys. 449: 99-101


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-galactosidase
A
489Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15)EC: 3.2.1.23
Find proteins for D9PZ08 (Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15))
Go to UniProtKB:  D9PZ08
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

Download SDF File 
Download CCD File 
A
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.159 
  • R-Value Work: 0.143 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.180α = 90.00
b = 84.180β = 90.00
c = 166.220γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
BALBESphasing
REFMACrefinement
AUTOMARdata collection
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-10
    Type: Initial release
  • Version 1.1: 2013-09-04
    Type: Database references