4H0C

Crystal structure of phospholipase/Carboxylesterase from Dyadobacter fermentans DSM 18053


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.136 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of phospholipase/Carboxylesterase from Dyadobacter fermentans DSM 18053

Chang, C.Holowicki, J.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phospholipase/Carboxylesterase
A, B
210Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Mutation(s): 0 
Find proteins for C6VYE5 (Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114))
Go to UniProtKB:  C6VYE5
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

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Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CIT
Query on CIT

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Download CCD File 
A, B
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 40.157α = 72.77
b = 40.251β = 78.37
c = 67.256γ = 76.09
Software Package:
Software NamePurpose
HKL-3000data scaling
RESOLVEphasing
HKL-3000phasing
ARP/wARPmodel building
MLPHAREphasing
SBC-Collectdata collection
HKL-3000data reduction
SHELXDEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DMphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-09-26
    Type: Initial release